View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_35 (Length: 390)
Name: NF1150_low_35
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 36596969 - 36597329
Alignment:
| Q |
1 |
ctactcacgaatttattcatggtttttcacggtgagtcatcttcagctttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgca |
100 |
Q |
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| T |
36596969 |
ctactcacgaatttattcatggtttttcacggtgagtcatcttcaactttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgca |
36597068 |
T |
|
| Q |
101 |
cgacaaattattcagttattatttaaacattctattctaccnnnnnnntaaataataaacattcttcttttctcttgatgataaacattcttttttgcgt |
200 |
Q |
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| T |
36597069 |
caacaaattattcagttattatttaaacattctattctaccaaaaaaataaataataaacattcttcttttctcttgatgataaacattcttttttgcgt |
36597168 |
T |
|
| Q |
201 |
atggatattatttaaacatatatacttaatgttgtagttattataaatatatatagggccacgataaatgataaatacagtgaatgtcttgtattaattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36597169 |
atggatattatttaaacatatatacttaatgttgtagttattataaatatatataggaccacgataaatgataaatacagtgaatgtcttgtattaattc |
36597268 |
T |
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| Q |
301 |
ctcttctaaattggagaacattttgtatattacgattaattaactattacatgttgctttg |
361 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36597269 |
ctcttctaaattggagaaaattttgtatattacgattaattaactattccatgttgctttg |
36597329 |
T |
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