View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_39 (Length: 381)
Name: NF1150_low_39
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 372
Target Start/End: Complemental strand, 30991425 - 30991189
Alignment:
| Q |
136 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
235 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
30991425 |
agagctgtgttttctggatcagaagtatgtgaatgaattgacaacgaagggaaaaggtgtgccgactcaagatgattggaaacgtgtcagggaaatcctt |
30991326 |
T |
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| Q |
236 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
335 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30991325 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
30991226 |
T |
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| Q |
336 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
372 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30991225 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
30991189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 372
Target Start/End: Original strand, 43072220 - 43072456
Alignment:
| Q |
136 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
235 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
43072220 |
agagctgtgttttctggatcagaagtatgtgaatgaattgacaacgaagggaaaaggtgtgccgactcaagatgattggaaacgtgtcagggaaatcctt |
43072319 |
T |
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| Q |
236 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
335 |
Q |
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| T |
43072320 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
43072419 |
T |
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| Q |
336 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
372 |
Q |
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| T |
43072420 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
43072456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 30992535 - 30992465
Alignment:
| Q |
70 |
tattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaacatcagagc |
140 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30992535 |
tattttatgtttatagaatcattgcaagatgacaagtgatggtaaccttcaaacatccgcaacatcagagc |
30992465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 43071110 - 43071180
Alignment:
| Q |
70 |
tattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaacatcagagc |
140 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43071110 |
tattttatgtttatagaatcattgcaagatgacaagtgatggtaaccttcaaacatccgcaacatcagagc |
43071180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 372
Target Start/End: Complemental strand, 4458312 - 4458076
Alignment:
| Q |
136 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4458312 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaaaggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
4458213 |
T |
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| Q |
236 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
335 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |
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| T |
4458212 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggtccgtcttatttaacaggtaatatttatatgtttcagatccttggtattgggaaaa |
4458113 |
T |
|
| Q |
336 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
372 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
4458112 |
ggatagttgaaatgtgcagctctgaggatgtttatct |
4458076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 4459435 - 4459349
Alignment:
| Q |
54 |
tgtggtgatatggtcttattttatgtttatagaatcatcacaagataacaagtgatggtaaccttcaaacatccgcaacatcagagc |
140 |
Q |
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| T |
4459435 |
tgtgttgatatggtcttattttatgtttatagaatcatcacaagatgacaagtgatggtaatcttcaaacatccgcaacatcagagc |
4459349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 185 - 372
Target Start/End: Original strand, 33132938 - 33133125
Alignment:
| Q |
185 |
ggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatccttccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgt |
284 |
Q |
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||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
33132938 |
ggaaaaggtgtgctgactcaagatgattggaaacgtgtcagggaaatccttccattcttgaaattgttttatgatgctacaatacgcatatcaggttcgt |
33133037 |
T |
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| Q |
285 |
cttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaaggatagttgaaatgtgcagctctgaggatgttcatct |
372 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33133038 |
cttatttaacaaggaatatttatatgtttgagatccttggtattgggaaaaggattgttgaaatgtgcagctctgaggatgttcatct |
33133125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 27225929 - 27225875
Alignment:
| Q |
6 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatctgtggtg |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
27225929 |
acagccatgtaatttgggatcaatacaattagaaagggttgaatcatttgtggtg |
27225875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 10674105 - 10674051
Alignment:
| Q |
6 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatctgtggtg |
60 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
10674105 |
acagccatgtaatttgggatcaatacaattagaaatgggtgaattatttgtggtg |
10674051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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