View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_44 (Length: 367)
Name: NF1150_low_44
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 33860271 - 33860596
Alignment:
| Q |
13 |
gagacaagcattcttaaacaatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtata |
112 |
Q |
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| T |
33860271 |
gagacaagcattcttaaacaatggtggatactccgtacctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtata |
33860370 |
T |
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| Q |
113 |
taagattttcatctctcaattgaatttattatcacttggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgt |
212 |
Q |
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| T |
33860371 |
taagattttcatctctcaattgaatttattatcacttggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgt |
33860470 |
T |
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| Q |
213 |
ttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccat |
312 |
Q |
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| T |
33860471 |
ttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatcgagcattgccttgcaacagtagatagaaaacaacaaccat |
33860570 |
T |
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| Q |
313 |
ggttaatctttgcagcacatcgtcca |
338 |
Q |
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| T |
33860571 |
ggttaatctttgcagcacatcgtcca |
33860596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 152 - 334
Target Start/End: Original strand, 33875288 - 33875470
Alignment:
| Q |
152 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaagga |
251 |
Q |
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| T |
33875288 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcatttctgtatagcagacagtgagcatgactggagagaagga |
33875387 |
T |
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| Q |
252 |
tcggaacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcg |
334 |
Q |
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| T |
33875388 |
tcggaacagtacaaattcatcgagcattaccttgcaactgtagatagaaaacaacaaccatggttaatatttgcagcacatcg |
33875470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 156 - 334
Target Start/End: Original strand, 33870701 - 33870879
Alignment:
| Q |
156 |
aatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcgg |
255 |
Q |
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| T |
33870701 |
aatgaacgacgaaaattggaaatatgcaggtatgccacagattatggcatgtttcgtttctgtatagcagacactgaacatgactggagagaaggatcgg |
33870800 |
T |
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| Q |
256 |
aacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcg |
334 |
Q |
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| T |
33870801 |
aacaatacaaattcatcgagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcg |
33870879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 335
Target Start/End: Original strand, 42784256 - 42784409
Alignment:
| Q |
182 |
caggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatagagcattgc |
281 |
Q |
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|||||||||||| ||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||||||| ||||| ||||||||||| |||||||| |
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| T |
42784256 |
caggtatgcaacggattatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
42784355 |
T |
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| Q |
282 |
cttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgt |
335 |
Q |
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| T |
42784356 |
cttgcaacagtggacagacaaaaacaaccctggttgatctttgctgcgcatcgt |
42784409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 20003693 - 20003611
Alignment:
| Q |
198 |
tatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatagagcattg |
280 |
Q |
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| T |
20003693 |
tatggcatgttccgtttctgtgtcgcagacactgaacatgattggagagaaggaacagaacaatacaagttcattgagcattg |
20003611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 29534734 - 29534702
Alignment:
| Q |
36 |
gtggatactccgtacctataacatggttataaa |
68 |
Q |
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| T |
29534734 |
gtggatacttcgtacctataacatggttataaa |
29534702 |
T |
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