View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_45 (Length: 357)
Name: NF1150_low_45
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 2147007 - 2146692
Alignment:
| Q |
30 |
aattataggttggaatttactaacaagactcaccgcatataattgtagagttattgattcgagggaatccactcctcctaaatgaacttattattaacaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2147007 |
aattataggttggaatttactaacaagactcaccgcatataattgtagagttattcattcgagggaatccactcctcctaaatgaacttattattaacaa |
2146908 |
T |
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| Q |
130 |
aactcnnnnnnnnnnnnnnnnnnngagatagcaagactcttgttatatactactacattctcaaagaacaatagacctaagaatatttggacttcttgct |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146907 |
aactcttattttattttatttttagagatagcaagactcttgttatatactactacattctcaaagaacaatagacctaagaatatttggacttcttgct |
2146808 |
T |
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| Q |
230 |
atcattgaacttatatatcgcatgctcctttgcagtagtccatcaaagaactagattcgttgagataaaagggacagtatacataatccaaatggacaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146807 |
atcattgaacttatatatcgcatgctcctttgcagtagtccatcaaagaactagattcgttgagataaaagggacagtatacataatccaaatggacaca |
2146708 |
T |
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| Q |
330 |
taaggaaaataatatt |
345 |
Q |
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|||||||||||||||| |
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| T |
2146707 |
taaggaaaataatatt |
2146692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 2143048 - 2142992
Alignment:
| Q |
66 |
atataattgtagagttattgattcgagggaatccactcctcctaaatgaacttatta |
122 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
2143048 |
atataattgtagagttattcatttgagggaatccactcttcctaaatgaacttatta |
2142992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 2142672 - 2142623
Alignment:
| Q |
196 |
aacaatagacctaagaatatttggacttcttgctatcattgaacttatat |
245 |
Q |
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|||||||| ||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
2142672 |
aacaataggcctgaaaatgtttggacttcttgctatcattgaacttatat |
2142623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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