View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_46 (Length: 354)
Name: NF1150_low_46
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 93 - 279
Target Start/End: Complemental strand, 44743232 - 44743046
Alignment:
| Q |
93 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattac |
192 |
Q |
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| T |
44743232 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattcg |
44743133 |
T |
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| Q |
193 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgtgtatcagcaacagct |
279 |
Q |
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| T |
44743132 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaagtaaatatccaacctctaagaaacgtgtgtatcaacaacagct |
44743046 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 53238988 - 53238891
Alignment:
| Q |
166 |
gagaagagggtgtggaaaacaaattacacatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgt |
264 |
Q |
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| T |
53238988 |
gagaggagggtg-ggaaaacaaatgccacataaaaaaacttgtttgggccaaaatggtccaattctctcaactaaatatccaacctttaagaaacgtgt |
53238891 |
T |
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