View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_48 (Length: 347)
Name: NF1150_low_48
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 52340519 - 52340209
Alignment:
| Q |
28 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
127 |
Q |
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| T |
52340519 |
caccgggatccaccaacaacttcttccttggcggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
52340420 |
T |
|
| Q |
128 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340419 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
52340320 |
T |
|
| Q |
228 |
agatacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
327 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340319 |
agatacctctctcattgtcatgggcaattttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
52340220 |
T |
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| Q |
328 |
atgagaataat |
338 |
Q |
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|| | |||||| |
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| T |
52340219 |
ataataataat |
52340209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 52334516 - 52334316
Alignment:
| Q |
28 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
127 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| | |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52334516 |
cacccggatccaccaacaacttcttcctcggcggtgcaggagagagaggcattcaaattcaagacaaattcgtcaaattcaccgccattggtgtttattt |
52334417 |
T |
|
| Q |
128 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
227 |
Q |
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| T |
52334416 |
gcaggatatcgctgttccatatcttgcagagaaatggaaggccagatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggt |
52334317 |
T |
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| Q |
228 |
a |
228 |
Q |
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| T |
52334316 |
a |
52334316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 76 - 338
Target Start/End: Complemental strand, 9184664 - 9184402
Alignment:
| Q |
76 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacc |
175 |
Q |
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| T |
9184664 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggacatcgctattccatatcttgccgcgaaatggaagggtaaacc |
9184565 |
T |
|
| Q |
176 |
tcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtagatacctctctcattgtcgtgggcatttttataaatttaatcataga |
275 |
Q |
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| T |
9184564 |
tcctcacaagttaacagaatccgttcccttcttcttggacattgttacaggtggatacctctctaattgtcatgggcatttttataaatttaatcataga |
9184465 |
T |
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| Q |
276 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgatgagaataat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
9184464 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgataataataat |
9184402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 9181106 - 9180917
Alignment:
| Q |
39 |
accaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcg |
138 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
9181106 |
accaacaacttcttccttggcggcacaggggctagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggatatcg |
9181007 |
T |
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| Q |
139 |
ctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggta |
228 |
Q |
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| T |
9181006 |
ctgttccatatcttgcagagaaatggaaggccaaatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggta |
9180917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 9190347 - 9190295
Alignment:
| Q |
28 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatc |
80 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9190347 |
caccgagatccaccaacaacttcttccttggcagcgcaggggtgagaggtatc |
9190295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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