View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_59 (Length: 305)
Name: NF1150_low_59
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_59 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 22079365 - 22079070
Alignment:
| Q |
1 |
gaaaatacaaatcaacttttggatgaaagacttaaagtacattattagtctctttaatgaaattagaagtcattttcaatttataaaatttcttaaccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22079365 |
gaaaatacaaatcaacttttggatgaaagacttaaagtacattattaatctctttaatgaaattagaagtcattttcaatttataacatttcttaaccat |
22079266 |
T |
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| Q |
101 |
atgaaatatatctacaggggaacattactaagttgtacattgtgggaggattttggtcttcaattcctgaatttttgcaacaattctgagtctggaccaa |
200 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
22079265 |
attttatctatctacaggggaacattactaagttgtacattgtgggaggattttggtcttcaattccttaatttttgcaacaattctgagtttggaccaa |
22079166 |
T |
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| Q |
201 |
ctatcattgttcttcacaatgctaagattaaggaagccacaggttattaataattaagtacttattaattattatttggccatctaacagaataat |
296 |
Q |
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| T |
22079165 |
ctatcattcttcttcacaatgctaagattaaggaagccacatgttattaataatgaagtacttaataattattatttgggcatctaacagaataat |
22079070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 23699536 - 23699398
Alignment:
| Q |
113 |
tacaggggaacattactaagttgtacattgtgggaggattttggtcttcaattcctgaatttttgcaacaattctgagtctggaccaactatcattgttc |
212 |
Q |
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||||||||||||||| ||| |||||| ||||||| || | ||||||||||||||| || | ||| ||||| |||||||||| | ||||| ||| |
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| T |
23699536 |
tacaggggaacattattaaactgtacactgtgggaagactatggtcttcaattcctaaagtc------caaatctgattctggaccaattgtcattcttc |
23699443 |
T |
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| Q |
213 |
ttcacaatgctaagattaaggaagccacaggttattaataattaa |
257 |
Q |
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|||||||| |||| ||||||||||||||| |||||| |||||||| |
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| T |
23699442 |
ttcacaattctaaaattaaggaagccacaagttatttataattaa |
23699398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23699647 - 23699609
Alignment:
| Q |
1 |
gaaaatacaaatcaacttttggatgaaagacttaaagta |
39 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| |
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| T |
23699647 |
gaaaatacaaatcaacttctggatgaaagacctaaagta |
23699609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 124360 - 124305
Alignment:
| Q |
192 |
ctggaccaactatcattgttcttcacaatgctaagattaaggaagccacaggttat |
247 |
Q |
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||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |
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| T |
124360 |
ctggaccaactatcattcttctgcacaatgctaagattaagaaagccacaggttat |
124305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 124492 - 124453
Alignment:
| Q |
1 |
gaaaatacaaatcaacttttggatgaaagacttaaagtac |
40 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| |
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| T |
124492 |
gaaaattcaaatcaacttttggatgaaagacttacagtac |
124453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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