View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_low_6 (Length: 719)

Name: NF1150_low_6
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_low_6
NF1150_low_6
[»] chr1 (1 HSPs)
chr1 (35-719)||(46942199-46942883)


Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 35 - 719
Target Start/End: Original strand, 46942199 - 46942883
Alignment:
Q  35 gctgttgcttgctcgtgttcttttattggcagggacaacaatctgtttccttttctcaggcttaaccttctccagctgttcaagtcgcttcttcagactc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942199 gctgttgcttgctcgtgttcttttattggcagggacaacaatctgtttccttttctcaggcttaaccttctccagctgttcaagtcgcttcttcagactc 46942298  T
Q  135 tcggcagggaattcagcctcaaggttgtattcttctatgcatttaatcacggccttgagtgcagactgctcctttcttgcagctagatactgtgaaatta 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942299 tcggcagggaattcagcctcaaggttgtattcttctatgcatttaatcacggccttgagtgcagactgctcctttcttgcagctagatactgtgaaatta 46942398  T
Q  235 cattcagcatnnnnnnnntcagttaaaatagtaaaccccatttgtaacaagtcaagaaaatataacagagcattgttaccattcccgacttttttcttcc 334  Q
    ||||||||||        ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46942399 cattcagcataaaaaaaatcagttaaaatagtaaaccccatttgtaataagtcaagaaaatataacagagcattgttaccattgccgacttttttcttcc 46942498  T
Q  335 aactaatcaaaacaagcaacataaatagatgagataaaccagaaaccaaatcagtatttacaaactaacaacacattgtaaatgtagcctaaaggataat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942499 aactaatcaaaacaagcaacataaatagatgagataaaccagaaaccaaatcagtatttacaaactaacaacacattgtaaatgtagcctaaaggataat 46942598  T
Q  435 tttaacactctattccctcatctctaacaagtctcaagtgtaaccttcctaagctgcatactctatacaagtaaaccaaagatataaaatttctggactc 534  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942599 tttaacactctattcccttatctctaacaagtctcaagtgtaaccttcctaagctgcatactctatacaagtaaaccaaagatataaaatttctggactc 46942698  T
Q  535 tatcatacacacattcactaaacaacagaacacacgatcctattttaaattcaagggtaccaataccatgcagccgaaatatgaaatcggcagtgaaatg 634  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942699 tatcatacacacattcactagacaacagaacacacgatcctatttcaaattcaagggtaccaataccatgcagccgaaatatgaaatcggcagtgaaatg 46942798  T
Q  635 aaagctatgttactcattcattgaccaccataaaggagagcttcatttagcatccacaacatttaacatatttgatcaattatag 719  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46942799 aaagctatgttactcattcattgaccaccataaaggagagcttaatttagcatccacaacatttaacatatttgatcaattatag 46942883  T

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