View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_61 (Length: 301)
Name: NF1150_low_61
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_61 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 17878590 - 17878860
Alignment:
| Q |
21 |
cattcttcctggcagcagccacaccaaacgctacggccactgcaactgtaatatgatgcgaagataaaaccattaaacaaaaagagagaaactcatggac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17878590 |
cattcttcctggcagcagccacaccaaacgctacggccactgcaactgtagtatgatgcgaagataaaaccattaaacaaaaagagagaaactcatggac |
17878689 |
T |
|
| Q |
121 |
catgacacaacccaaaatttaaacaggttaataggctcgttttatttagcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaacg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17878690 |
catgacacaacccaaaatttaaacaggttaataggctcgttttatttagcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaatg |
17878789 |
T |
|
| Q |
221 |
aacaactaacaagtaaaatctgaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17878790 |
aacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
17878860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 15046092 - 15046199
Alignment:
| Q |
130 |
acccaaaatttaaacaggttaataggctcgttttattta----gcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaa |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
15046092 |
acccaaaatttaaactggttaataggctcattttatttacttagatcacacaagattgaaaa----taatatacaaagtcaaaaggaatttaatgagcaa |
15046187 |
T |
|
| Q |
226 |
ctaacaagtaaa |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15046188 |
ctaacaagtaaa |
15046199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 14772009 - 14772090
Alignment:
| Q |
178 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaa |
259 |
Q |
| |
|
||||| || |||| ||||||||||||| |||||||||||||||||||| |||||||| || |||| ||||||||||||| |
|
|
| T |
14772009 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaa |
14772090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 15045797 - 15045878
Alignment:
| Q |
20 |
acattcttcctggcagcagccacaccaaacgctacggccactgcaactgtaatatgatgcgaagataaaaccattaaacaaa |
101 |
Q |
| |
|
||||||||||| ||| || |||| |||| || || |||||| || |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
15045797 |
acattcttccttgcaacaaccaccacaaatgccacagccactacagctgtaatatgatgcgatgataaaatcattaaacaaa |
15045878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University