View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_63 (Length: 299)
Name: NF1150_low_63
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_63 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 22079940 - 22079682
Alignment:
| Q |
30 |
ttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttcaaagcacatatcaatgatggtta |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22079940 |
ttgacatgtggactgttgcaaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtgggtttcaaagcacatatcaatgatggtta |
22079841 |
T |
|
| Q |
130 |
caacatcactgatctataattaattttaatagaaactaatgttttaaaaagtatgtataattcacttctaatttccatcagggtgatcgtattcaaataa |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22079840 |
caacatcactcatctataattaattttaatagaaactaatgttttaaaaagtatgtataattcacttctaatttccatcaggttgatcgtattcaaataa |
22079741 |
T |
|
| Q |
230 |
ttctgccatctgaactcaaagataagtttaagggtataattgctgagaacactaccttt |
288 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
22079740 |
ttctgccatttgaactcaaagatcagtttaagggtagaattgttgagaacactaccttt |
22079682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 1522613 - 1522736
Alignment:
| Q |
30 |
ttgacatgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttcaaagcacatatcaatgatggtta |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||| |||||| |
|
|
| T |
1522613 |
ttgacatgtggactgttgcaaattcaaagaagaaacagcatattgagatggtgttgtgtgacaaagaggtgggtttgaaagcactcaactatg-tggtta |
1522711 |
T |
|
| Q |
130 |
caacatcactgatctataattaatt |
154 |
Q |
| |
|
|||||||||| ||||||| |||||| |
|
|
| T |
1522712 |
caacatcactaatctatatttaatt |
1522736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 23700233 - 23700170
Alignment:
| Q |
36 |
tgtggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagaggt |
99 |
Q |
| |
|
||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23700233 |
tgtggactgttactaattcaaagagcaaacaacatattgagatggtgttgtgtgacaaagaggt |
23700170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 23700060 - 23699983
Alignment:
| Q |
207 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagataagtttaagggtataattgctgagaacactac |
284 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
23700060 |
tcagggtgatcgaattcaagtaattttgccaactgaattcaaagataagtttaagagtagaattgctgagaacgctac |
23699983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 125067 - 125005
Alignment:
| Q |
38 |
tggactgttgcaaattcaaagaacaaacagcatattgagatggtgttgtgtgacaaagaggtg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
125067 |
tggactgttggaaattcaaagaacaaacaacatattgagatggtggggtgcgacaaagaggtg |
125005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 124897 - 124820
Alignment:
| Q |
207 |
tcagggtgatcgtattcaaataattctgccatctgaactcaaagataagtttaagggtataattgctgagaacactac |
284 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||| |||||||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
124897 |
tcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactac |
124820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University