View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_72 (Length: 251)
Name: NF1150_low_72
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 1869363 - 1869582
Alignment:
| Q |
30 |
gaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtgactgttagagagtgt |
129 |
Q |
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| T |
1869363 |
gaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtgactattagagagtgt |
1869462 |
T |
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| Q |
130 |
taagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactcttttagagcattatgtac |
229 |
Q |
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| T |
1869463 |
taagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactcttttagagcattatgtac |
1869561 |
T |
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| Q |
230 |
cttacaaatgatgatgatgtc |
250 |
Q |
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| T |
1869562 |
cttacaaatgatggtgatgtc |
1869582 |
T |
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