View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_75 (Length: 243)
Name: NF1150_low_75
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 6026129 - 6026345
Alignment:
| Q |
5 |
atgtcgaagaatatggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtg |
104 |
Q |
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| T |
6026129 |
atgtcaaagaaaagggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtg |
6026228 |
T |
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| Q |
105 |
aagctactcaagtaccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
204 |
Q |
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| T |
6026229 |
aagctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
6026328 |
T |
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| Q |
205 |
tccttgaatattgtatt |
221 |
Q |
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| T |
6026329 |
tccttgaatattgtatt |
6026345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
148 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
207 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
50 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
123 |
Q |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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