View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_78 (Length: 216)
Name: NF1150_low_78
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 6026151 - 6026345
Alignment:
| Q |
16 |
aaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagcag |
115 |
Q |
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| T |
6026151 |
aaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaagcag |
6026250 |
T |
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| Q |
116 |
aacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
210 |
Q |
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| T |
6026251 |
aacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
6026345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
137 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
196 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
39 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
112 |
Q |
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||||||||||||||||||||||||||||| || |||||||| || |||||||||||| | |||||| ||||| |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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