View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_8 (Length: 655)
Name: NF1150_low_8
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 15493657 - 15494207
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493657 |
tgagataaatgcaaatgtgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
15493756 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15493757 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagttttt |
15493856 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493857 |
catgctcattcgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
15493956 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatatagttaaaataggatcaggcgcgtaggccagcctcgtctaaattgagggtccatccagaggagccaaaattg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493957 |
aacatatatacagatgttaagtaaaatatagttaaaataggatcaggcacgtaggccagcctcgtctaaattgagggtccatccagaggagccaaaattg |
15494056 |
T |
|
| Q |
408 |
aaaatgcaaagccataagataaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494057 |
aaaatgcaaagccataagataaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagt |
15494156 |
T |
|
| Q |
508 |
tgagctcgtggtgctaattttgcagccaagtgtaatatagtgtttctgtct |
558 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494157 |
tgacctcgtcgtgctaattttgcagccaagtgtaatatagtgtttctgtct |
15494207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 15517487 - 15517784
Alignment:
| Q |
12 |
atgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttg |
111 |
Q |
| |
|
||||| ||| |||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| || |
|
|
| T |
15517487 |
atgaacgcagatgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactg |
15517586 |
T |
|
| Q |
112 |
cagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15517587 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatg |
15517686 |
T |
|
| Q |
212 |
ctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
15517687 |
ctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaa |
15517784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 15534000 - 15534297
Alignment:
| Q |
12 |
atgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttg |
111 |
Q |
| |
|
||||||||| |||| |||||| ||||||| |||||||||| || |||| |||| |||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
15534000 |
atgaatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactg |
15534099 |
T |
|
| Q |
112 |
cagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
15534100 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatg |
15534199 |
T |
|
| Q |
212 |
ctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
|||||||||||| | |||| |||||||| | || |||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15534200 |
ctcatttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaa |
15534297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 15654449 - 15654775
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15654449 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15654548 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||| |||||| ||| |
|
|
| T |
15654549 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgttt |
15654648 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
15654649 |
catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaa |
15654748 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatatag |
338 |
Q |
| |
|
|| ||||||| |||||||||||||||| |
|
|
| T |
15654749 |
aatgtatatac----gttaagtaaaatatag |
15654775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 15645397 - 15645686
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15645397 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15645496 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||| ||| |||||| ||| |
|
|
| T |
15645497 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagtgttt |
15645596 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
297 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
15645597 |
catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15645686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 15624772 - 15625098
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
15624772 |
tgagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagta |
15624871 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||| | ||| |||||| ||| |
|
|
| T |
15624872 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagtgttt |
15624971 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||| ||||||| || |||| ||| || | | ||| |||||| | ||| || ||| | ||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
15624972 |
catgctcaattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttctgtcacatgaa |
15625071 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatatag |
338 |
Q |
| |
|
|| ||||| |||||||||||||||||| |
|
|
| T |
15625072 |
aatgtatat----atgttaagtaaaatatag |
15625098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 37 - 309
Target Start/End: Original strand, 15601209 - 15601481
Alignment:
| Q |
37 |
caaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactccagtagcaat |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
|
| Q |
137 |
gactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacagttcttctgca |
236 |
Q |
| |
|
||| | ||||||||||||||||||||| || | |||||| |||||||||| ||| |||||||||| |||||| |||||||| | ||||| |||| |
|
|
| T |
15601309 |
gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca |
15601408 |
T |
|
| Q |
237 |
gtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
|| | | ||| |||||| | || ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
15601409 |
gtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaa |
15601481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 434 - 557
Target Start/End: Original strand, 15655016 - 15655139
Alignment:
| Q |
434 |
gttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagc |
533 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15655016 |
gttgcattgcatgtacctcaaaccatactaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagc |
15655115 |
T |
|
| Q |
534 |
caagtgtaatatagtgtttctgtc |
557 |
Q |
| |
|
|||||| |||| |||||||||||| |
|
|
| T |
15655116 |
caagtgcaataaagtgtttctgtc |
15655139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 15645858 - 15645987
Alignment:
| Q |
428 |
aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattt |
527 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15645858 |
aaaagggttgcattgcatgtacctcaaaccatagtaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgatttcgtggtgctaattt |
15645957 |
T |
|
| Q |
528 |
tgcagccaagtgtaatatagtgtttctgtc |
557 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |
|
|
| T |
15645958 |
tgcagccaagtgcaatagtgtgtttctgtc |
15645987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 15625463 - 15625592
Alignment:
| Q |
428 |
aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattt |
527 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
15625463 |
aaaagggttgcattgcatgtacctcaaaccataataactcaaggcacatttgaaaagctgacccagaaaccaattcaagttgaacttgtggtgctaattt |
15625562 |
T |
|
| Q |
528 |
tgcagccaagtgtaatatagtgtttctgtc |
557 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |
|
|
| T |
15625563 |
tgcagccaagtgcaataaagtgtttctgtc |
15625592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 447 - 553
Target Start/End: Original strand, 15534698 - 15534804
Alignment:
| Q |
447 |
tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagccaagtgtaatata |
546 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
15534698 |
tacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa |
15534797 |
T |
|
| Q |
547 |
gtgtttc |
553 |
Q |
| |
|
||||||| |
|
|
| T |
15534798 |
gtgtttc |
15534804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 447 - 553
Target Start/End: Original strand, 15517883 - 15517989
Alignment:
| Q |
447 |
tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgagctcgtggtgctaattttgcagccaagtgtaatata |
546 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |||| ||||| |||| | |
|
|
| T |
15517883 |
tacctcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaa |
15517982 |
T |
|
| Q |
547 |
gtgtttc |
553 |
Q |
| |
|
|||||| |
|
|
| T |
15517983 |
ctgtttc |
15517989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 15605601 - 15605656
Alignment:
| Q |
503 |
caagttgagctcgtggtgctaattttgcagccaagtgtaatatagtgtttctgtct |
558 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
15605601 |
caagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttctgtct |
15605656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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