View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_87 (Length: 201)
Name: NF1150_low_87
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 47285603 - 47285432
Alignment:
| Q |
21 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47285603 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaactactcttgtttctgtcat |
47285504 |
T |
|
| Q |
121 |
tgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgagcgcctatgctactcc |
192 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
47285503 |
tgcttttattgatcagtcgcatgctccttctttcagttatgatactcaaaatataagcgcctgtgctcctcc |
47285432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 47307160 - 47307007
Alignment:
| Q |
21 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattc-aaaagctcgatgatggaacaactactcttgttcctgtca |
119 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| || |
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| T |
47307160 |
aagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctcc-gattccaaaagctcaatgatggaacaactacttttgttcc---ca |
47307065 |
T |
|
| Q |
120 |
ttgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
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|||||||| |||| |||||||||||| |||| | |||||| ||| ||| |||||||| |
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| T |
47307064 |
ttgcttctgttgaccagtcacatgctgtttctgtaagttataataatcataatatgag |
47307007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 2589649 - 2589494
Alignment:
| Q |
22 |
agaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||| || || |
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| T |
2589649 |
agaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatggaacaactacttttgttccagttgtt |
2589550 |
T |
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| Q |
122 |
gcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
|
|||||| ||||||| || |||||| ||| ||| |||||||| |||||||||||| |
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| T |
2589549 |
gcttctgttgatcaatctcatgctactttggtcaattatgataatcaaaatatgag |
2589494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 2589833 - 2589978
Alignment:
| Q |
32 |
aaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattg |
131 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| || |||||||| ||| ||| ||||||||| ||| |||||| || ||| |||| ||| |
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| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttgtttctgttg |
2589932 |
T |
|
| Q |
132 |
atcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
|
||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
2589933 |
atcagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
2589978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 10299710 - 10299555
Alignment:
| Q |
22 |
agaagagagaaaaaa-gagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| || | |
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|
| T |
10299710 |
agaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgatagaacaactacttttgttccggttgt |
10299611 |
T |
|
| Q |
121 |
tgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
|
| ||||| ||||||| || |||||| ||| ||| |||||||| |||||||||||| |
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|
| T |
10299610 |
t-cttctgttgatcattctcatgctactttgatcaattatgataatcaaaatatgag |
10299555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 10299891 - 10300039
Alignment:
| Q |
29 |
agaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttcta |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||| ||| |||||| || ||| ||||| |
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|
| T |
10299891 |
agaaaaaagagatacatgtctaggatcccaaagagataaaatcttcagattccaaaactcaatgttggaacaacaacttttgttcaagttgttgtttcta |
10299990 |
T |
|
| Q |
129 |
ttgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
|
|||||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
10299991 |
ttgatcagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
10300039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 22222382 - 22222226
Alignment:
| Q |
22 |
agaagagagaaaaaagagatacatgtctaggatccgaaagag--accagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtca |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||| || ||||||||||||||||| |||||| || |
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|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttcgagttg |
22222283 |
T |
|
| Q |
120 |
ttgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatga |
176 |
Q |
| |
|
||||||||||||| || || |||||| ||| | ||| |||||||| ||||||||||| |
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|
| T |
22222282 |
ttgcttctattgaccaatctcatgctgcttttgtcaattatgataatcaaaatatga |
22222226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 22222556 - 22222712
Alignment:
| Q |
21 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||| || |||| ||||||||||| ||| ||| ||||||||| || ||||| | || | |
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|
| T |
22222556 |
aagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttgtttcagttgt |
22222655 |
T |
|
| Q |
121 |
tgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
177 |
Q |
| |
|
|| ||| ||||||||| |||||| ||||| ||| |||||||| |||||||||||| |
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|
| T |
22222656 |
tgtttccgttgatcagttgcatgctgcttctatcaattatgataatcaaaatatgag |
22222712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 38261087 - 38261211
Alignment:
| Q |
21 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||||| ||||||||||||||||| |||||||||| || |
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|
| T |
38261087 |
aagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttat |
38261186 |
T |
|
| Q |
121 |
tgcttctattgatcagtcacatgct |
145 |
Q |
| |
|
||||| | |||| ||||||||||| |
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|
| T |
38261187 |
tgcttgtggtgataagtcacatgct |
38261211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 38244787 - 38244911
Alignment:
| Q |
21 |
aagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcat |
120 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||| |||||||||| | |
|
|
| T |
38244787 |
aagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgt |
38244886 |
T |
|
| Q |
121 |
tgcttctattgatcagtcacatgct |
145 |
Q |
| |
|
||||| | |||| ||||||||||| |
|
|
| T |
38244887 |
tgcttgtgctgataagtcacatgct |
38244911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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