View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_9 (Length: 618)
Name: NF1150_low_9
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 10 - 590
Target Start/End: Complemental strand, 44457975 - 44457395
Alignment:
| Q |
10 |
ccacagaccaaaaaagtaggacatgtcagaaatattacctgtaaatgatgaggacatcagccaagaattttagctggataagtattgagtctaaattttg |
109 |
Q |
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| T |
44457975 |
ccacagaccaaaaaagtaggacatgtcagaaatattacctgtaaatgatgaggacatcagccaagaattttagctggataagtattgagtctaaattttg |
44457876 |
T |
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| Q |
110 |
agaacatccagaacctgaatttcttattagataaagctcttgcagaatttctttcaaatctttcttaatggcgttatgccaaagatgaagaactttaatc |
209 |
Q |
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| T |
44457875 |
agaacatccagaacctgaatttcttattagataaagctcttgcagaatttctttcaaatctttcttaatggcgttatgccaaagatggagaactttaatc |
44457776 |
T |
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| Q |
210 |
tggttgaccccatcttctgtttctttgtcattcactttcctctgactcgaaatttctttggagtagttcctattgaatgaactcggaccaaatggttttt |
309 |
Q |
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| T |
44457775 |
tggttgaccccatcttctgtttctttgtcattcactttcctctgactcgaaatttctttggagtagttcctgttgaatgaactcggaccaaatggttttt |
44457676 |
T |
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| Q |
310 |
ctatatgtaggaatccatgagagccttgaagttcctcactctgaaaatatgtcccggtgaaggtttgtttgttgcttccaagccaagaaaccaaaacctt |
409 |
Q |
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| T |
44457675 |
ctatatgtaggaatccatgagagccttgaagttcctcactctgaaaatatgtcccggtgaaggtttgtttgttgcttccaagccaagaaaccaaaacctt |
44457576 |
T |
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| Q |
410 |
cacaattagatcggaattattaaaaaggcggggggagtatataaaattttattcaatattcactaataaactttagctaacctcttgcagtgttgtttcc |
509 |
Q |
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| T |
44457575 |
cacaattagatcggaattattaaaaaggcggggggagtatataaaattttattcaatattcactaataaactttagctaacctcttgcagtgttgtttcc |
44457476 |
T |
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| Q |
510 |
attggtgcaatttcattaaaacaccgagtaacttctgcttgtttatctgctgaaaggaaggacaccatccatggcaaaact |
590 |
Q |
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| T |
44457475 |
attggtgcaatttcattaaaacaccgagtaacttctgcttgtttatctgctgaaaggaaggacaccatccatggcaaaact |
44457395 |
T |
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