View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11510_low_1 (Length: 343)

Name: NF11510_low_1
Description: NF11510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11510_low_1
NF11510_low_1
[»] chr1 (2 HSPs)
chr1 (18-343)||(45923036-45923359)
chr1 (50-101)||(45922293-45922344)
[»] chr7 (8 HSPs)
chr7 (50-105)||(42607137-42607192)
chr7 (50-102)||(44541047-44541099)
chr7 (50-105)||(40257636-40257691)
chr7 (50-105)||(6730095-6730150)
chr7 (50-97)||(6729462-6729509)
chr7 (114-161)||(36845203-36845250)
chr7 (58-105)||(40257747-40257794)
chr7 (50-97)||(42607750-42607797)
[»] chr8 (2 HSPs)
chr8 (50-105)||(35943132-35943187)
chr8 (50-97)||(35943776-35943823)
[»] chr2 (2 HSPs)
chr2 (114-162)||(28030249-28030297)
chr2 (133-165)||(38739880-38739912)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 45923036 - 45923359
Alignment:
Q  18 agagaaatgtagtggaagataaagcnnnnnnntaatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggacnnnnnnnncttt 117  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  45923036 agagaaatgtagtggaagataaagcaaaaaaataatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggacaaaaaaaacttt 45923135  T
Q  118 tccatgatgaaaaataatttccctatcccatgctaaacctcaccccaattgaaatcgatttttgaaagattgtgtggaatatccctttggttggtcgata 217  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45923136 tccatggtggaaaacaatttccctatcccatgctaaacctcaccccaattgaaatcgatttttgaaagattgtgtggaatatccctttggttggtcgata 45923235  T
Q  218 attttttcccagggatgcttcgcattgtttgtactgaaaatcttgtatcatttttatgagtctcctgtgaccagttcaaaagagactcacaaattgtctt 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  45923236 attttttaccagggatgcttcgcattgtttgtactgaaaatcttgtatcatttt--tgagtctcctgtgaccagttcaaaagagactcacaaattgtctt 45923333  T
Q  318 aacctgttaaccatattcatatgcct 343  Q
    ||||||||||||||||||||||||||    
T  45923334 aacctgttaaccatattcatatgcct 45923359  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 45922344 - 45922293
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45922344 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaat 45922293  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 42607192 - 42607137
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggac 105  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  42607192 taatcaagtgttgatagatcatgataagattgtgtttctcatttgatctaatggac 42607137  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 44541099 - 44541047
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatg 102  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  44541099 taattaagtgttgataggccatgataagattgtgtttcttatttgatctaatg 44541047  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 40257691 - 40257636
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggac 105  Q
    |||||||||||||||||| |||||||||| |||||||||  |||||||||||||||    
T  40257691 taatcaagtgttgatagatcatgataagaatgtgtttctcatttgatctaatggac 40257636  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 6730095 - 6730150
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggac 105  Q
    ||||||| |||| ||||||||||||||||||||||||||  ||||||| |||||||    
T  6730095 taatcaaatgtttatagaccatgataagattgtgtttctcatttgatccaatggac 6730150  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 6729509 - 6729462
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatc 97  Q
    |||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  6729509 taattaagtgttgataaaccatgataagattgtgtttctcatttgatc 6729462  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 36845203 - 36845250
Alignment:
Q  114 cttttccatgatgaaaaataatttccctatcccatgctaaacctcacc 161  Q
    |||||||||||||| ||| |||| |||| |||||||||||||||||||    
T  36845203 cttttccatgatgagaaacaattcccctttcccatgctaaacctcacc 36845250  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 40257747 - 40257794
Alignment:
Q  58 tgttgatagaccatgataagattgtgtttcttgtttgatctaatggac 105  Q
    |||||||||| |||||||||| |||||||||  |||||||||||||||    
T  40257747 tgttgatagatcatgataagaatgtgtttctcatttgatctaatggac 40257794  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 42607750 - 42607797
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatc 97  Q
    ||||||||||||||||||  |||||||||||||||||||  |||||||    
T  42607750 taatcaagtgttgatagattatgataagattgtgtttctcatttgatc 42607797  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 35943187 - 35943132
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatctaatggac 105  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||  |||||||    
T  35943187 taatcaagtgttgatagaccatgataagattgtgtttctcatttgattcaatggac 35943132  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 35943776 - 35943823
Alignment:
Q  50 taatcaagtgttgatagaccatgataagattgtgtttcttgtttgatc 97  Q
    |||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  35943776 taattaagtgttgataaaccatgataagattgtgtttctcatttgatc 35943823  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 28030297 - 28030249
Alignment:
Q  114 cttttccatgatgaaaaataatttccctatcccatgctaaacctcaccc 162  Q
    |||| |||| |||||||||| ||| ||| ||||||||||||||||||||    
T  28030297 ctttcccatcatgaaaaatatttttcctttcccatgctaaacctcaccc 28030249  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 38739880 - 38739912
Alignment:
Q  133 aatttccctatcccatgctaaacctcaccccaa 165  Q
    ||||||||| |||||||||||||||||||||||    
T  38739880 aatttccctttcccatgctaaacctcaccccaa 38739912  T

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