View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_10 (Length: 372)
Name: NF11511_high_10
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 4836020 - 4836179
Alignment:
| Q |
11 |
agatcatagaagaattgggatctatataacacatgcattcattaatgatgacttggtgataagcttctttctatgaccacaagttgacccatagtgacta |
110 |
Q |
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| T |
4836020 |
agatcatagaagaattgagatctatataacacatgcaatcattgatgatgacttggtgataagcttccttccatgaccacaagctgacctatagccacta |
4836119 |
T |
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| Q |
111 |
catatttatagagccatagtttgtcccacat---aagttcgagaaacttagagatgtaaa |
167 |
Q |
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| T |
4836120 |
catatttatagaaccatagtttgtcccacatcgaaagtttgaaaaacatagagatgtaaa |
4836179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 4798502 - 4798660
Alignment:
| Q |
11 |
agatcatagaagaattgggatctat---ataacacatgcattcatt---aatgatgacttggtgataagcttctttctatgaccacaagttgacccatag |
104 |
Q |
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| T |
4798502 |
agatcatagaagaattcagatctatataataacacatgcattcattgacgacgatgacttggtgataagcttccttccttgaccacaagctgacccatag |
4798601 |
T |
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| Q |
105 |
tgactacatatttatagagccatagtttgtcccacat---aagttcgagaaacttagagatgtaaa |
167 |
Q |
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| T |
4798602 |
-------atatttatagaaccatagtttgtcccacatcggaagtttgagaaacttagagatgtaaa |
4798660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 4817755 - 4817818
Alignment:
| Q |
107 |
actacatatttatagagccatagtttgtcccacat---aagttcgagaaacttagagatgtaaa |
167 |
Q |
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| T |
4817755 |
actacatatttatagagccatagtttgtcccacatcgaaagtttgagaaacttagagatgtaaa |
4817818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 4817697 - 4817753
Alignment:
| Q |
11 |
agatcatagaagaattgggatctatataacacatgcattcattaatgatgacttggt |
67 |
Q |
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| T |
4817697 |
agatcatagatgaattcagatctatataacacatgcattcattgatgattacttggt |
4817753 |
T |
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