View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_13 (Length: 357)
Name: NF11511_high_13
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 23 - 354
Target Start/End: Original strand, 31337697 - 31338029
Alignment:
| Q |
23 |
aaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatccacgagttgtcattgacttattgtat |
122 |
Q |
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| T |
31337697 |
aaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatccacgagttgtcattgacttattgtat |
31337796 |
T |
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| Q |
123 |
tggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaatgagcgtaaggcatcaaagtgtatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337797 |
tggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaatgagcgtaaggcatcaaagtgtatt |
31337896 |
T |
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| Q |
223 |
atttatattgtcatcttatcattgtgaaattcagttcatgca-nnnnnnnaatcccaccacctatataaataattgaaatttggtcaaaaagtaatttgt |
321 |
Q |
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| T |
31337897 |
atttatattgtcttcttatcattgtgaaattcagttcatgcattttttttaatcccaccacctatataaataattgaaatttggtcaaaaagtaatttgt |
31337996 |
T |
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| Q |
322 |
tacttacttttaagcctataattttattttcat |
354 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31337997 |
tacttacttttaagcctataattttattttcat |
31338029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 31306149 - 31306367
Alignment:
| Q |
23 |
aaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatccacgagttgtcattgacttattgtat |
122 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
31306149 |
aaattccttatagaatagaatgttttattgtgctatcaaa-taaatgtgcaatatactttatgatagaataatccacgagttgtcgttgagttattgtat |
31306247 |
T |
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| Q |
123 |
tggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaatgagcgtaaggcatcaaagtgtatt |
222 |
Q |
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|||||| ||| |||||||| ||||||| ||||| || |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
31306248 |
tggcactaaataattttattttatctttccttacggaaattcatgaaccttgcgtttatatgttttactctcaaatggccgtaaggcattaaagtgtatt |
31306347 |
T |
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| Q |
223 |
atttatattgtcatcttatc |
242 |
Q |
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||||| |||||| ||||||| |
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| T |
31306348 |
atttagattgtcttcttatc |
31306367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 25948534 - 25948603
Alignment:
| Q |
50 |
ttgtgctatcaaaataaatgtgcaatatactttatgatagaataatccacgagttgtcattgacttattg |
119 |
Q |
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| T |
25948534 |
ttgtgctagcaaaataagtgtgcaatataccttatgatagaatattgcatgagttgtcatttagttattg |
25948603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 31306416 - 31306496
Alignment:
| Q |
272 |
aatcccaccacctatataaataa-ttgaa-atttggtcaaaaagtaatttgttacttacttttaagcctataattttattt |
350 |
Q |
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| T |
31306416 |
aatcccactacctataaaaataacttgaatatttggttaaaaggttcttttttacttacttttaagcctataattttattt |
31306496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 31292895 - 31292956
Alignment:
| Q |
31 |
tatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaat |
92 |
Q |
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|||| ||||||| | ||| |||| ||| |||||||||||||||| ||||| ||||||||||| |
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| T |
31292895 |
tatacaatagaacgattttttgtactagcaaaataaatgtgcaacatactgtatgatagaat |
31292956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 32625188 - 32625148
Alignment:
| Q |
39 |
agaatgttttattgtgctatcaaaataaatgtgcaatatac |
79 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||| |
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| T |
32625188 |
agaatgttttgttatgctaccaaaataaatgtgcaatatac |
32625148 |
T |
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