View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_18 (Length: 331)
Name: NF11511_high_18
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 3565694 - 3566000
Alignment:
| Q |
12 |
ataggccatcatgttgattattgcaaaagatggcaccctgaagaagagatcagaacaaagaatattgggtaaaggtaaggaagtaatcaatgttgagaaa |
111 |
Q |
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| T |
3565694 |
ataggccatcatgttgattattgcaaaagatggcaccctgaagaagagatcagaacagagaatactgagtaaaggtaaggaagtaatcaatgtcgagaaa |
3565793 |
T |
|
| Q |
112 |
gaagttatcaatgttgaggaattacctggaaatgataagaatgataaggaacaagaggaggtgcagtctaatgtgaagactcctgacaaaaacacttcac |
211 |
Q |
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| T |
3565794 |
gaagttatcaatgttgaggaattggctggaaatgataagaatgataaggaacaagaggaggtgcagtctaatgtgaagactcctgacaaaaacacttcac |
3565893 |
T |
|
| Q |
212 |
ctgctgaactgttaaaggcccaagatttgcaaatagaagtggaaataaaggccaacattcaagttaattatgttggagacttagatgtgaatgcgcaaga |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3565894 |
ctgctgaactcttaaaggcccaagatttgcaaatagaagtggaaataaatgccaacattcaagttaattctgttggagacttagatgtgaatgcgcaaga |
3565993 |
T |
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| Q |
312 |
tgatact |
318 |
Q |
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||||||| |
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| T |
3565994 |
tgatact |
3566000 |
T |
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