View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_22 (Length: 243)
Name: NF11511_high_22
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 8029132 - 8028919
Alignment:
| Q |
18 |
ctaaaaatattgttgaaatcattcccttgaagatcattcatgaagacttggtattctggagactcgtgattatgttcttggcaaagtttctttactaatt |
117 |
Q |
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| T |
8029132 |
ctaaaaatgttgttgaaatcattcccttgaagatcattcatgaagacttggtattctggagactcgtgattatgttcttggcaaagtttatcaactaatt |
8029033 |
T |
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| Q |
118 |
tgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8029032 |
tgataacttcagatatcaccaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctt |
8028933 |
T |
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| Q |
218 |
tatggcttcatctc |
231 |
Q |
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|||||||||||||| |
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| T |
8028932 |
tatggcttcatctc |
8028919 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 7298122 - 7298171
Alignment:
| Q |
129 |
gatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
178 |
Q |
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| T |
7298122 |
gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaat |
7298171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 32709889 - 32709950
Alignment:
| Q |
117 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
178 |
Q |
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| T |
32709889 |
ttgataaattctgataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaat |
32709950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 32704200 - 32704240
Alignment:
| Q |
138 |
aacaaagtgtttggcccagaagaacaacccaaatctgcaat |
178 |
Q |
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| T |
32704200 |
aacaaagtgtttggtccataagagcaacccaaatctgcaat |
32704240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 27736914 - 27736976
Alignment:
| Q |
116 |
tttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
178 |
Q |
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|||||||| ||| |||||||| |||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
27736914 |
tttgataatttctgatatcaccaacatagtgtttggcccaaaagagcaacccaagtctgcaat |
27736976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 5811596 - 5811657
Alignment:
| Q |
117 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
178 |
Q |
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||||||| |||||| ||||| || ||||||||||| ||| |||| |||||||| |||||||| |
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| T |
5811596 |
ttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaat |
5811657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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