View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_23 (Length: 243)
Name: NF11511_high_23
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25990463 - 25990685
Alignment:
| Q |
1 |
ttccctcggtctccaagcatacaacacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttgaaggatagattctgttcttcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25990463 |
ttccctcggtctccaagcatacaacacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaaaggatagattctgttcttcaag |
25990562 |
T |
|
| Q |
101 |
atgtgcgatttgcaaatcttgttcatcaactctattctctaaactatattcatcacctgaacttggatatatcatctcaaacctgctcaaatcattgttc |
200 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990563 |
atgtgtgatttgcaaatcttgctcatcaactctattctctaaactatgttcatcacctgaacttggatatatcatctcaaacctgctcaaatcattgttc |
25990662 |
T |
|
| Q |
201 |
aatctcttctcaacctccaaaac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
25990663 |
aatctcttctcaacctccaaaac |
25990685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 25968401 - 25968611
Alignment:
| Q |
7 |
cggtctccaagcatacaacacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttgaaggatagattctgttcttcaagatgtgc |
106 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||| |
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| T |
25968401 |
cggtctcaaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattttgttcttcaagatgttt |
25968500 |
T |
|
| Q |
107 |
gatttgcaaatcttgttcatcaactctattctctaaactatattcatcacctgaac---ttggatatatcatctcaaacctgctcaaatcattgttcaat |
203 |
Q |
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|||| |||||| ||||||||||| |||||||| ||| ||| || |||||| ||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
25968501 |
aattttcaaatcatgttcatcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctacttaaatcattgttcaat |
25968600 |
T |
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| Q |
204 |
ctcttctcaac |
214 |
Q |
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||||||||||| |
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| T |
25968601 |
ctcttctcaac |
25968611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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