View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_5 (Length: 448)
Name: NF11511_high_5
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 8004815 - 8005232
Alignment:
| Q |
1 |
atggaggtggttttgatggtttcaattttgatggagcttatgcagaatgattagtannnnnnnnnaattcaccagatttacttttttggtcccatggtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
8004815 |
atggaggtggttttgatggtttcaattttgatggagcttatgcagaatgattagtatttttttttaattcaccagatttacttttttgctcccatggtac |
8004914 |
T |
|
| Q |
101 |
atgttgggaatcttggtttagctttgtttttatgttctagaaacatggttaattactttgattgttgatagtttatactcaaaatatagtaatgaccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8004915 |
atgttgggaatcttggtttagctttgtttttatgttctagaaacatggttaattactttgattgttgatagtttatattcaaaatatagtaatgaccatt |
8005014 |
T |
|
| Q |
201 |
atcctctccgaagaaaagtgagtacgttgataaaacgagtataatgagaatataacgagaataataacatttaaataatttcctagatgtgtcatattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8005015 |
atcctctccgaagaaaagtgagtacgttgataaaacga-----------atataacgagaataataacatttaaataatttcctagatgtgtcatattta |
8005103 |
T |
|
| Q |
301 |
tgattgggacttttatactccaaaatttgtacggaaatgatgttttacagctatttataatagttttgggacaaatcttgttatattcttttattagatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8005104 |
tgattgggacttttatactccaaaatttgtacggaaatgatgttttacagctatttataatagttttgggacaaatcttgttatattcttttattagatt |
8005203 |
T |
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| Q |
401 |
gttactgtaggctttttgtaccagcatgt |
429 |
Q |
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|||||||||||||||||||| ||||||| |
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| T |
8005204 |
gttactgtaggctttttgtaatagcatgt |
8005232 |
T |
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