View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11511_high_6 (Length: 393)
Name: NF11511_high_6
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 7141414 - 7141214
Alignment:
| Q |
17 |
gatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtataga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7141414 |
gatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaattatagaagaacatgtataga |
7141315 |
T |
|
| Q |
117 |
attcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7141314 |
attcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggtta |
7141215 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
7141214 |
t |
7141214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 7141216 - 7141077
Alignment:
| Q |
243 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7141216 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatcc |
7141117 |
T |
|
| Q |
343 |
acaagatcttccttctcaatttcactcttgttaccttcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7141116 |
acaagatcttccttctcaatttcactcttgttaccttcat |
7141077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 7154184 - 7154105
Alignment:
| Q |
17 |
gatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctgaaat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
7154184 |
gatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcagttccggcaacaaatacgtcctgaaat |
7154105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 7153046 - 7152924
Alignment:
| Q |
244 |
ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcca |
343 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||||| |||| | || || ||||||| | ||||||||||||||| |||||||||||| | |
|
|
| T |
7153046 |
ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatcta |
7152947 |
T |
|
| Q |
344 |
caagatcttccttctcaatttca |
366 |
Q |
| |
|
||||||||| || |||| |||| |
|
|
| T |
7152946 |
gaagatcttcgttatcaacttca |
7152924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 7130839 - 7130752
Alignment:
| Q |
266 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
353 |
Q |
| |
|
|||||||||||||||||||| | |||| | | ||| |||||||||||||||| ||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
7130839 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University