View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_high_9 (Length: 387)
Name: NF11511_high_9
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 41675261 - 41674892
Alignment:
| Q |
1 |
cttaggagtgaagagtttgaagttgagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgta |
100 |
Q |
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| T |
41675261 |
cttaggagtgaagagtttgaagtagagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgta |
41675162 |
T |
|
| Q |
101 |
tagtaatatccaaaactagctagctttcacactatgcaactgattctttatttgtgtgtagggnnnnnnngggtactgtgataataagagagaagagaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41675161 |
tagtaatatccaaaactagctagctttcacactatgcaactgattctttatttgtgtgtagggaaaaaaagggtactgtgataataagagagaagagaag |
41675062 |
T |
|
| Q |
201 |
ttagtgagagtgtgtgagtattcaaagagatcatcaatgtttgctagtatattctggtcagcagtgtgtttatatatagtcatatacatgtccacttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675061 |
ttagtgagagtgtgtgagtattcaaagagatcatcaatgtttgctagtatatact-gtcagcagtgtgtttatatatagtcatatacatgtccacttatt |
41674963 |
T |
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| Q |
301 |
ggtcctcacttctcattcatacattagttttggtaatgaaaagtttga-agttggtctcaatggtccatta |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41674962 |
ggtcctcacttctcattcatacattagttttggtaatgaaaagtttgagagttggtctcaatggtccatta |
41674892 |
T |
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