View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_low_1 (Length: 919)
Name: NF11511_low_1
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 711; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 90 - 905
Target Start/End: Complemental strand, 43186836 - 43186018
Alignment:
| Q |
90 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatccttttt |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43186836 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatgcttttt |
43186737 |
T |
|
| Q |
190 |
aatgtttgattattttagtataaaaatatattggttaataacgagtccggatgaatttcggcgatgaataatgaaaatgaatgaatttatgttatgaaga |
289 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
43186736 |
aatgtttgattatgttagtataaaaatatattggttaataacgagtccggatgaatttctgcgatgaataatgaaaattaatgaatttatgttatgaaga |
43186637 |
T |
|
| Q |
290 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctata-gttaagattcaagtggcattgtccaaagatccaagtggggcct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43186636 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctaaaagttaagattcaagtggcattgtccaaagatgcaagtggggcct |
43186537 |
T |
|
| Q |
389 |
aattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagcagaaggctacacaattggtttgctacatcgagtatctgttgccaat |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
43186536 |
aattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagcaggaggctaccaaattggtttgctacattgagtatctgttgccaat |
43186437 |
T |
|
| Q |
489 |
agacgatagtagccgcggtagtggccgtgatagcggagcagctgccttccgccccccatgcagaggtccggtgtatcctttaagattattttagtgttta |
588 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186436 |
agacgatagtagccgcggtggtggctgtgatagcggagcagctgccttccgccccccatgcagaggtccggtgtatcctttaagattattttagtgttta |
43186337 |
T |
|
| Q |
589 |
tgatgaagaaaattatcagtttttatcatcattgttgttaaatagcagctgt--atagctcgtagcatagccaatttcaagcaaaccactcttctccgcg |
686 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186336 |
tgatgaagaaaattatcagttgtaatcatcattgttgttaaatagcagctgtacatagctcgtagcatagccaatttcaagcaaaccactcttctccgcg |
43186237 |
T |
|
| Q |
687 |
atctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgtt |
786 |
Q |
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| T |
43186236 |
atctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgtt |
43186137 |
T |
|
| Q |
787 |
ttagcttcataacatctgaagaaatgttgagttagcaaccattttccgctctgcgatgtaggttttccagaggttagagnnnnnnngcaacaagtgccag |
886 |
Q |
| |
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| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43186136 |
tcagcttcataacatctgaagaaatgttgacttagcaaccattttccactctgcgatgtaggttttccagaggttagaggttttttgcaacaagtgccag |
43186037 |
T |
|
| Q |
887 |
gcttgtgctcttcacaggt |
905 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
43186036 |
gcttgtgctcttcacaggt |
43186018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 43187208 - 43187115
Alignment:
| Q |
1 |
aaaacacacttgattcccttctctattccgttgattggaagattttcagtgttgaaactgaaaattaaaaacctatgtgatctatatataatca |
94 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187208 |
aaaacacacttgattcccttctctattccattgatcggaagattttcagtgttgaaactgaaaattaaaaacctatgtgatctatatataatca |
43187115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 23609379 - 23609323
Alignment:
| Q |
295 |
tcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctatagttaag |
351 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
23609379 |
tcagagtgaatttcactggtggaatgaaaatgagtgttgtggaatcctacagttaag |
23609323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 23622844 - 23622784
Alignment:
| Q |
283 |
atgaagaacgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattccta |
343 |
Q |
| |
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|||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||| |
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| T |
23622844 |
atgaagaatgattcagagtaaatttcggtggtggaatgaaaatgagtgatgtggattccta |
23622784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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