View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_low_12 (Length: 369)
Name: NF11511_low_12
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 25990462 - 25990126
Alignment:
| Q |
1 |
atggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtgatcactgatgaacattatggtagat |
100 |
Q |
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| T |
25990462 |
atggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtgatcactgatgaacattatggtagat |
25990363 |
T |
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| Q |
101 |
agaactgtgtttgactaattcaagtgaaattagttaatgtttgaaattgcgatggttttgatgaagttaaattgacaccgtgattcgattgaaccgtact |
200 |
Q |
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| T |
25990362 |
agaactgtgtttgactaatccaagtgaaattagttaatgtttgaaattgcgatggttttgatgaagttaaattgacaccgtgatttgattgaaccg---- |
25990267 |
T |
|
| Q |
201 |
ttatctttgtcaatctcactgcca------------attgagtcactaaaatgttcagtttacttcattgtttcttgggctgcaagtatcttatgacaag |
288 |
Q |
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| T |
25990266 |
ttatctttgtcaatctcactgccaattgaaacatacattgaatcactaaaatgttcagtttacttcattgtttcttgggctgcaagtatcttatgagaag |
25990167 |
T |
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| Q |
289 |
agtttgatggattttgctgtaatatcctaaatgattataga |
329 |
Q |
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| T |
25990166 |
agtttgatggattttgctgtaatatcctaaatgattataga |
25990126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 25968392 - 25968318
Alignment:
| Q |
2 |
tggcgctggtgatcgtgagtctgagaatttcaacggcatagatgtttgctcggagaagagcgtcggaaatggtga |
76 |
Q |
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||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||| ||| ||||||||| |
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| T |
25968392 |
tggcgctggtgataacgagtctgagaatttcaacgaccaagatgtttgcttggagaagagcatcgaaaatggtga |
25968318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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