View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11511_low_13 (Length: 357)

Name: NF11511_low_13
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11511_low_13
NF11511_low_13
[»] chr1 (1 HSPs)
chr1 (18-282)||(44331630-44331894)
[»] chr6 (3 HSPs)
chr6 (124-282)||(13409896-13410054)
chr6 (153-279)||(10554616-10554742)
chr6 (176-228)||(10029998-10030050)
[»] chr3 (3 HSPs)
chr3 (124-282)||(43490026-43490184)
chr3 (129-282)||(45013877-45014030)
chr3 (176-230)||(49103598-49103652)
[»] chr8 (1 HSPs)
chr8 (124-282)||(38653102-38653260)
[»] chr7 (2 HSPs)
chr7 (194-282)||(6568909-6568997)
chr7 (194-282)||(6583068-6583156)
[»] chr4 (1 HSPs)
chr4 (176-236)||(1726250-1726310)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 44331630 - 44331894
Alignment:
Q  18 gttgttgtggctgtatttgcggtggtgcaggggaataatgggttgccggagaaacagaagatgttgaagtattcaccggaaaagttggtcttgttgcact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44331630 gttgttgtggctgtatttgcggtggtgcaggggaataatgggttgccggagaaacagaagatgttgaagtattcaccggaaaagttggtcttgttgcact 44331729  T
Q  118 tgctggaacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44331730 tgctggaacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaat 44331829  T
Q  218 gttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44331830 gttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 44331894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 13410054 - 13409896
Alignment:
Q  124 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 223  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || || ||||||||     
T  13410054 aacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcct 13409955  T
Q  224 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||    
T  13409954 agccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatgg 13409896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 10554742 - 10554616
Alignment:
Q  153 tgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatc 252  Q
    |||||||| ||||||| |||||||||||||| |||||  | ||||||||||| || |||||||| || |||||||| ||||||||| |||| |  |||||    
T  10554742 tgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatc 10554643  T
Q  253 tcgaatttctgctgcccattttcccca 279  Q
    ||  ||||| ||||||||||| |||||    
T  10554642 tcttatttcagctgcccatttccccca 10554616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 10030050 - 10029998
Alignment:
Q  176 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 228  Q
    |||||||| ||||||||||||||  | || || ||||||||||||||||||||    
T  10030050 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagcca 10029998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 282
Target Start/End: Original strand, 43490026 - 43490184
Alignment:
Q  124 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 223  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || || ||||| || ||||||||||||||     
T  43490026 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcct 43490125  T
Q  224 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    | |||||||||||||||||||  ||||||||  || |||||||||||||||||||||||    
T  43490126 aaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatgg 43490184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 282
Target Start/End: Original strand, 45013877 - 45014030
Alignment:
Q  129 tttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 228  Q
    ||||||| || ||||| || ||| || ||||| ||||||| | |||||||||||| || ||    |||||||| || || |||||||||||||| |||||    
T  45013877 tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca 45013976  T
Q  229 tactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    ||| ||||| || || |  ||||| ||||| ||||| ||||| |||||||||||    
T  45013977 tacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatgg 45014030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 49103598 - 49103652
Alignment:
Q  176 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccata 230  Q
    ||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||    
T  49103598 gcttcatcgtatgctctagctgcatcctctgcagtttcaaaagtaccaagccata 49103652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 282
Target Start/End: Original strand, 38653102 - 38653260
Alignment:
Q  124 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 223  Q
    |||||||||||||||||||||||| ||| |||||||||| || |  |||| ||||| ||| || ||| | |||||| |||| || ||||||||||| ||     
T  38653102 aacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacct 38653201  T
Q  224 agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    | |||||||||||  ||||||   |||||||  || |||||||||||||||||||||||    
T  38653202 aaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatgg 38653260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 6568997 - 6568909
Alignment:
Q  194 gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    |||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||    
T  6568997 gctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6568909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 6583156 - 6583068
Alignment:
Q  194 gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatgg 282  Q
    |||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||    
T  6583156 gctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatgg 6583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  176 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttg 236  Q
    |||||||| || |||||||||||| ||||||| |||||||||||||| | ||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University