View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11511_low_2 (Length: 772)

Name: NF11511_low_2
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11511_low_2
NF11511_low_2
[»] chr3 (6 HSPs)
chr3 (22-763)||(3887931-3888682)
chr3 (422-615)||(3910707-3910900)
chr3 (74-118)||(13806146-13806190)
chr3 (80-157)||(2315456-2315533)
chr3 (80-157)||(47364804-47364881)
chr3 (577-615)||(3907350-3907388)
[»] scaffold0137 (2 HSPs)
scaffold0137 (22-763)||(2274-3025)
scaffold0137 (422-615)||(17539-17732)
[»] chr7 (3 HSPs)
chr7 (80-152)||(5015145-5015217)
chr7 (74-118)||(29906635-29906679)
chr7 (74-119)||(28773880-28773925)
[»] chr5 (2 HSPs)
chr5 (79-152)||(43537566-43537639)
chr5 (74-118)||(12498254-12498298)
[»] chr4 (1 HSPs)
chr4 (74-118)||(52906423-52906467)
[»] chr8 (1 HSPs)
chr8 (79-156)||(35514549-35514626)


Alignment Details
Target: chr3 (Bit Score: 680; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 22 - 763
Target Start/End: Complemental strand, 3888682 - 3887931
Alignment:
Q  22 ccgagacactccggcaagatacatatgattgcaacatc--------agtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 113  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888682 ccgagacactccggcaagatacatatgattgcaacatctttagttcagtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 3888583  T
Q  114 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagag--taatgaaaatagt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3888582 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagagactaatgaaaatagt 3888483  T
Q  212 gttttaagaaactttattaaaacgcataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 311  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888482 gttttaagaaactttattaaaacgaataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 3888383  T
Q  312 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888382 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 3888283  T
Q  412 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgaaacttgcttcgagtaaaggacacttcatgatg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  3888282 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgcaacttgcttccagtaaaggacacttcttgatg 3888183  T
Q  512 gtcagtacagaaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgca 611  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888182 gtcaatacagaaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgca 3888083  T
Q  612 gccaatttccatccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcatt 711  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3888082 gccactttccatccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcatt 3887983  T
Q  712 caaaagatcatcacctccaatgtgcaatgttgtaagaaaagtgagcctttgc 763  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3887982 caaaagatcatcacctccaatgcgcaatgttgtaagaaaagtgagcctttgc 3887931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 422 - 615
Target Start/End: Original strand, 3910707 - 3910900
Alignment:
Q  422 ataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgaaacttgcttcgagtaaaggacacttcatgatggtcagtacag 521  Q
    |||||||  |||||||| || ||||| |||||||||||||| ||||||||||| |   |  ||||||  |||||| | ||   | |||| |||||||| |    
T  3910707 ataattatgcatggaatatgtgaaatcttaggccactctttgcctccattgctctgacagtttgcttgcagtaaaaggcatcgcttgatagtcagtaccg 3910806  T
Q  522 aaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagcca 615  Q
    ||||||| ||||| ||||||||||| || |||||||| ||    ||||| | || ||||||||||||||||||||| ||||||||||| |||||    
T  3910807 aaagagaggaaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatgctgaagcca 3910900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 13806190 - 13806146
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  13806190 gttttctgttttcattttcacttcaactaataaacataagagaat 13806146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 2315533 - 2315456
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaata 157  Q
    ||||||||||||||| ||| |||||||||||||||||||  | || ||| ||||| | |||| ||||| |||||||||    
T  2315533 tgttttcattttcacttcatctaataaacataagagaatatagatccaatatttcccccaccgttttcttttacaata 2315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 47364881 - 47364804
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaata 157  Q
    ||||||||||||||| ||||||||||||||||| ||||   ||||| || ||||  |||||||||||| || ||||||    
T  47364881 tgttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttctttcacaata 47364804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 615
Target Start/End: Complemental strand, 3907388 - 3907350
Alignment:
Q  577 aatctcaaggttttcaagagatgtgagatgctgcagcca 615  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  3907388 aatctcaaggttttcaagagacgtgagatgctgaagcca 3907350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 676; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 22 - 763
Target Start/End: Complemental strand, 3025 - 2274
Alignment:
Q  22 ccgagacactccggcaagatacatatgattgcaacatc--------agtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 113  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3025 ccgagacactccggcaagatacatatgattgcaacatctttagttcagtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 2926  T
Q  114 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagag--taatgaaaatagt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2925 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagagactaatgaaaatagt 2826  T
Q  212 gttttaagaaactttattaaaacgcataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2825 gttttaagaaactttattaaaacgaataagatcacttgtctctatcacaattattgactacaattgtcttccatatacttcttaggaatttataaacaca 2726  T
Q  312 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2725 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 2626  T
Q  412 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgaaacttgcttcgagtaaaggacacttcatgatg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  2625 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgcaacttgcttccagtaaaggacacttcttgatg 2526  T
Q  512 gtcagtacagaaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgca 611  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2525 gtcaatacagaaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgca 2426  T
Q  612 gccaatttccatccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcatt 711  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2425 gccactttccatccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcatt 2326  T
Q  712 caaaagatcatcacctccaatgtgcaatgttgtaagaaaagtgagcctttgc 763  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2325 caaaagatcatcacctccaatgcgcaatgttgtaagaaaagtgagcctttgc 2274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 422 - 615
Target Start/End: Original strand, 17539 - 17732
Alignment:
Q  422 ataattaaacatggaatgtgagaaattttaggccactctttccctccattgcttttgaaacttgcttcgagtaaaggacacttcatgatggtcagtacag 521  Q
    |||||||  |||||||| || ||||| ||| |||||||||| ||||||||||| |   |  ||||||  |||||| | ||   | |||| |||||||| |    
T  17539 ataattatgcatggaatatgtgaaatcttatgccactctttgcctccattgctctgacagtttgcttgcagtaaaaggcatcgcttgatagtcagtaccg 17638  T
Q  522 aaagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagcca 615  Q
    ||||||| ||||| ||||||||||| || |||||||| ||    ||||| | || ||||||||||||||||||||| ||||||||||| |||||    
T  17639 aaagagaggaaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatgctgaagcca 17732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 5015145 - 5015217
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgttta 152  Q
    ||||||||||||||| |||||||||||| ||||||||||| | || ||| ||||| |||||| ||||| ||||    
T  5015145 tgttttcattttcacttcaactaataaaaataagagaatgtagatccaatatttccctcacctttttctttta 5015217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 29906679 - 29906635
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  29906679 gtttactgttttcattttcacttcaactaataaacgtaagagaat 29906635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 28773925 - 28773880
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaatg 119  Q
    |||| ||||||||||||| || |||| |||||||||||||||||||    
T  28773925 gtttcctgttttcatttttacttcaaataataaacataagagaatg 28773880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 43537566 - 43537639
Alignment:
Q  79 ctgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgttta 152  Q
    |||||||||||||||| |||||||||||||||| ||||||  | ||| || ||||  |||||||||||| ||||    
T  43537566 ctgttttcattttcacttcaactaataaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 12498298 - 12498254
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| | |||||||||||||||||||||    
T  12498298 gttttctgttttcattttcacttaaactaataaacataagagaat 12498254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 52906467 - 52906423
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||    
T  52906467 gttttctgttttcattttcacttcaactaataatcataagagaat 52906423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 35514626 - 35514549
Alignment:
Q  79 ctgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaat 156  Q
    ||||||| |||| ||| |||||||||||||||||||||||  |  | ||||||||  | |||||||||| ||||||||    
T  35514626 ctgtttttatttccacttcaactaataaacataagagaatataggtccaacatttttcacaccattttcttttacaat 35514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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