View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11511_low_20 (Length: 327)

Name: NF11511_low_20
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11511_low_20
NF11511_low_20
[»] chr7 (2 HSPs)
chr7 (1-301)||(7109607-7109912)
chr7 (66-172)||(7110772-7110878)
[»] chr1 (4 HSPs)
chr1 (74-184)||(9987640-9987749)
chr1 (66-144)||(9986483-9986561)
chr1 (72-154)||(9992710-9992790)
chr1 (83-166)||(9991728-9991811)
[»] chr2 (2 HSPs)
chr2 (1-49)||(26169914-26169962)
chr2 (74-161)||(29873561-29873648)
[»] chr4 (1 HSPs)
chr4 (74-161)||(15841390-15841477)
[»] chr8 (1 HSPs)
chr8 (113-161)||(16524451-16524499)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 7109912 - 7109607
Alignment:
Q  1 ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagacgacttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||||||||||| ||||||||||||    
T  7109912 ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagacgacttat 7109813  T
Q  101 aaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcc-----ttgattttgttg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  7109812 aaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgattttgttg 7109713  T
Q  196 attggaaggaggctaatcaacttatccatcttcctactagaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatataatataa 295  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7109712 attggaaggaggctaatcaacttatccatcttcctaccaaaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatataatataa 7109613  T
Q  296 atgact 301  Q
     |||||    
T  7109612 gtgact 7109607  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
Q  66 tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga 165  Q
    ||||| || |||| |||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  7110772 tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga 7110871  T
Q  166 accaaat 172  Q
    |||||||    
T  7110872 accaaat 7110878  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
Q  74 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata 173  Q
    ||||| ||||||||  |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| |||||     
T  9987749 gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg 9987651  T
Q  174 tggatgatcct 184  Q
    |||| ||||||    
T  9987650 tggacgatcct 9987640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
Q  66 tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc 144  Q
    ||||| || |||| |||||||||||  |||||||||||||||||||||||| |||||| | |||||| |||||||||||    
T  9986561 tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc 9986483  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
Q  72 tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt 154  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| ||| |||| || | |||||||||| ||||||||||    
T  9992790 tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt 9992710  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
Q  83 ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa 166  Q
    ||||| ||||||| || ||| || |||||||||| |||||| ||||||||||||||| || ||||   ||||||||||||||||    
T  9991811 ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa 9991728  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
Q  1 ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc 49  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||    
T  26169914 ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc 26169962  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
Q  74 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 161  Q
    ||||| ||||||| || || |||| |||||| |||| | |||||||||||||| | | ||||| |||||||| || ||||||||||||    
T  29873648 gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct 29873561  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
Q  74 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 161  Q
    ||||| ||| ||| ||||| || | ||||||||||| | ||||||||||| || | | |||||||||||||| || ||||||||||||    
T  15841477 gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct 15841390  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
Q  113 ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 161  Q
    |||||||||||||| | | |||| |||||||||||| ||||||||||||    
T  16524451 ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct 16524499  T

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