View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_low_3 (Length: 500)
Name: NF11511_low_3
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 40761890 - 40762378
Alignment:
| Q |
9 |
agcataggatgaagggctgagaaaacatcctccatgtgtacacctaaagcatgacttgtggtaaaactcaccttccactgtcaactgtcataaacagaat |
108 |
Q |
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| T |
40761890 |
agcataggatgaagggctgagaaaacatcctccatgtgtacacctaaagcatgacttgtggtaaaactcaccttccactgtcaactgtcataaacagaat |
40761989 |
T |
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| Q |
109 |
ttcacaattaaagtatcagaaatgttttttagacatcagaatttgactccagacattgtgacattttatacgcttttcgattttatatnnnnnnnnttcc |
208 |
Q |
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| T |
40761990 |
ttcacaattaaagtatcagaaatgttttttagacatcagaatttgactccagacattgtgacattttatacgcttgtcgattttatataaaaaaaattcc |
40762089 |
T |
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| Q |
209 |
tcataatctaaacacactgaaaaccggtgtattatatatggtatgatcagtataagttatcgaatttttgtgtccaaatccagcgttgttggagtatata |
308 |
Q |
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| T |
40762090 |
tcataatctaaacacactgaaaaccggtgtattatatacggtat---cagtataagttatcgaatttttgtgtccaaatccagcgttgttggagtatata |
40762186 |
T |
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| Q |
309 |
tatgatcagaaaaaagggcccactgaaatcatggtatggtccagcagtgtttgattatatagttctattgttttagtagtacaatagtatctgaaattaa |
408 |
Q |
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| T |
40762187 |
tatgatcagaaaaaagggcccactgaaatcatggtatggtccagcagtgtttgattatatagttctattgttttagtagtacaatagtatctgaaattaa |
40762286 |
T |
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| Q |
409 |
cccaaatatataccttttcgaatggatatacagttttcttgcatgatgaacatttatcctgagtccctgagaagaaagcagaaagtttgctt |
500 |
Q |
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| T |
40762287 |
cccaaatatataccttttccaatggatatacagttttcttgcatgatgaacatttatcctgagtccctgagaagaaagcagaaagtttgctt |
40762378 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 42583888 - 42583924
Alignment:
| Q |
127 |
gaaatgttttttagacatcagaatttgactccagaca |
163 |
Q |
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| T |
42583888 |
gaaatgttttttagacatcagaatttgacaccagaca |
42583924 |
T |
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