View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_low_31 (Length: 208)
Name: NF11511_low_31
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 1712910 - 1713035
Alignment:
| Q |
18 |
aacatgtaaacgaggaaacaa-ttgatccacaagttacgttcaatatttacatacatatatattgatggattgaacatggattccacaagcaggaacata |
116 |
Q |
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| T |
1712910 |
aacatgtaaacgaggaaacaaattgatccacaagttacgttcaatatttacatacatatatattgatggattgaacatggattccacaagcaggaacata |
1713009 |
T |
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| Q |
117 |
agaaacaatacaatccacaagttaca |
142 |
Q |
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| T |
1713010 |
agaaacaatacaatccacaagttaca |
1713035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 1713380 - 1713426
Alignment:
| Q |
146 |
ttgcataggccacatggagaatatatgttacacatattgctataaat |
192 |
Q |
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| T |
1713380 |
ttgcataggccacatggagaatatatgttacaaatattgctacaaat |
1713426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 30015886 - 30015972
Alignment:
| Q |
36 |
caattgatccacaagttacgttcaatatttacatacatatatattgatggattgaacatggattccacaagcaggaacataagaaac |
122 |
Q |
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| T |
30015886 |
caattgatccacaagttacgtttaatctttacatacatatatattgatagattgaacatggattccacaagtaggaacataagaaac |
30015972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 30016500 - 30016546
Alignment:
| Q |
146 |
ttgcataggccacatggagaatatatgttacacatattgctataaat |
192 |
Q |
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| T |
30016500 |
ttgcataggctacatggagaatgtatgttacacctattgctacaaat |
30016546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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