View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11511_low_4 (Length: 479)

Name: NF11511_low_4
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11511_low_4
NF11511_low_4
[»] chr3 (4 HSPs)
chr3 (22-468)||(3888226-3888682)
chr3 (74-118)||(13806146-13806190)
chr3 (80-157)||(2315456-2315533)
chr3 (80-157)||(47364804-47364881)
[»] scaffold0137 (1 HSPs)
scaffold0137 (22-468)||(2569-3025)
[»] chr7 (3 HSPs)
chr7 (80-152)||(5015145-5015217)
chr7 (74-118)||(29906635-29906679)
chr7 (74-119)||(28773880-28773925)
[»] chr5 (2 HSPs)
chr5 (79-152)||(43537566-43537639)
chr5 (74-118)||(12498254-12498298)
[»] chr4 (1 HSPs)
chr4 (74-118)||(52906423-52906467)
[»] chr8 (1 HSPs)
chr8 (79-156)||(35514549-35514626)
[»] chr6 (1 HSPs)
chr6 (82-118)||(35094132-35094168)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 22 - 468
Target Start/End: Complemental strand, 3888682 - 3888226
Alignment:
Q  22 ccgagacactccggcaagatacatatgattgcaacatc--------agtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 113  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888682 ccgagacactccggcaagatacatatgattgcaacatctttagttcagtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 3888583  T
Q  114 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagag--taatgaaaatagt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3888582 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagagactaatgaaaatagt 3888483  T
Q  212 gttttaagaaactttattaaaacgcataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 311  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888482 gttttaagaaactttattaaaacgaataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 3888383  T
Q  312 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888382 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 3888283  T
Q  412 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctcc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888282 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctcc 3888226  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 13806190 - 13806146
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  13806190 gttttctgttttcattttcacttcaactaataaacataagagaat 13806146  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 2315533 - 2315456
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaata 157  Q
    ||||||||||||||| ||| |||||||||||||||||||  | || ||| ||||| | |||| ||||| |||||||||    
T  2315533 tgttttcattttcacttcatctaataaacataagagaatatagatccaatatttcccccaccgttttcttttacaata 2315456  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 47364881 - 47364804
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaata 157  Q
    ||||||||||||||| ||||||||||||||||| ||||   ||||| || ||||  |||||||||||| || ||||||    
T  47364881 tgttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttctttcacaata 47364804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 22 - 468
Target Start/End: Complemental strand, 3025 - 2569
Alignment:
Q  22 ccgagacactccggcaagatacatatgattgcaacatc--------agtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 113  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3025 ccgagacactccggcaagatacatatgattgcaacatctttagttcagtagtaaaatctagtttactgttttcattttcacctcaactaataaacataag 2926  T
Q  114 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagag--taatgaaaatagt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2925 agaatggaaattcaacatttcgctcaccattttcgtttacaatagttcagtagtcaaaacactattttcattatttctttaagagactaatgaaaatagt 2826  T
Q  212 gttttaagaaactttattaaaacgcataagatcacttgtctctatcacaattattgactacatttgtcttccatatacttcttaggaatttataaacaca 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2825 gttttaagaaactttattaaaacgaataagatcacttgtctctatcacaattattgactacaattgtcttccatatacttcttaggaatttataaacaca 2726  T
Q  312 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2725 gattttagaaattgaaaactgaatatttttagaaagttaatacatgatgatggcaaaaaacaaacaaggactcacctcacctagtcactcatatgatcac 2626  T
Q  412 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctcc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2625 ttgtctgttgataattaaacatggaatgtgagaaattttaggccactctttccctcc 2569  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 5015145 - 5015217
Alignment:
Q  80 tgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgttta 152  Q
    ||||||||||||||| |||||||||||| ||||||||||| | || ||| ||||| |||||| ||||| ||||    
T  5015145 tgttttcattttcacttcaactaataaaaataagagaatgtagatccaatatttccctcacctttttctttta 5015217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 29906679 - 29906635
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  29906679 gtttactgttttcattttcacttcaactaataaacgtaagagaat 29906635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 28773925 - 28773880
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaatg 119  Q
    |||| ||||||||||||| || |||| |||||||||||||||||||    
T  28773925 gtttcctgttttcatttttacttcaaataataaacataagagaatg 28773880  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 43537566 - 43537639
Alignment:
Q  79 ctgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgttta 152  Q
    |||||||||||||||| |||||||||||||||| ||||||  | ||| || ||||  |||||||||||| ||||    
T  43537566 ctgttttcattttcacttcaactaataaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 12498298 - 12498254
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| | |||||||||||||||||||||    
T  12498298 gttttctgttttcattttcacttaaactaataaacataagagaat 12498254  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 52906467 - 52906423
Alignment:
Q  74 gtttactgttttcattttcacctcaactaataaacataagagaat 118  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||    
T  52906467 gttttctgttttcattttcacttcaactaataatcataagagaat 52906423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 35514626 - 35514549
Alignment:
Q  79 ctgttttcattttcacctcaactaataaacataagagaatggaaattcaacatttcgctcaccattttcgtttacaat 156  Q
    ||||||| |||| ||| |||||||||||||||||||||||  |  | ||||||||  | |||||||||| ||||||||    
T  35514626 ctgtttttatttccacttcaactaataaacataagagaatataggtccaacatttttcacaccattttcttttacaat 35514549  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 35094168 - 35094132
Alignment:
Q  82 ttttcattttcacctcaactaataaacataagagaat 118  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  35094168 ttttcattttcacttcaactaataaacatcagagaat 35094132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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