View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11511_low_5 (Length: 453)
Name: NF11511_low_5
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 40823067 - 40822640
Alignment:
| Q |
10 |
gcagagacagcacataaacaacttacatctcaagtatgttggcactcaactgccaacggtcataagcaacacaattattgtttcatacgggagactccct |
109 |
Q |
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| T |
40823067 |
gcagagacatcacataaacaacttacatctcaagtatgttggcacccaactgccaacggtcataagcaacacaattattgtttcatacgggagactccct |
40822968 |
T |
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| Q |
110 |
acgaaataaatgaaatggggaggatcaaaattttagctgctannnnnnngaaagagctactactattctactgttgtttttctagttcgtgggagtttaa |
209 |
Q |
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| T |
40822967 |
acaaaataaatgaaatggggaggatcaaaattttagctgctatttttttgaaagagctactactattctactgttgtttttctagttcgtgggagtttaa |
40822868 |
T |
|
| Q |
210 |
tgagatgggaagtgatcccttttcattcataacatgccataaaatttgcaataacaacattatctttgaaatgttgagtgaccaaattgtgagaacatca |
309 |
Q |
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| T |
40822867 |
tgagatgggaagtgatcccttttcattcataacatgccataaaatttgcaataacaacattatctttgaaatgttgagtgaccaaattgtgagaacatca |
40822768 |
T |
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| Q |
310 |
gctttagtcacaatagtcaatttcacagctattcatgtaaggattctttgataaaaggaaacaaaaaagtgtttaaaattctttttagacggtggtgttt |
409 |
Q |
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| T |
40822767 |
gctttagtcacaatagtcaatttcacagctattcatgtaaggattctttgataaaaggaaacaaaaaagtgcttaaaattctttttagacggtggtgttt |
40822668 |
T |
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| Q |
410 |
catattgagttacccgaggagcagaatg |
437 |
Q |
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| T |
40822667 |
catattgagttacccgaggagcagaatg |
40822640 |
T |
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