View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11511_low_8 (Length: 390)
Name: NF11511_low_8
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 52 - 386
Target Start/End: Original strand, 2486899 - 2487233
Alignment:
| Q |
52 |
tctcaaagtaattaacttttatacatgcctttttgattagtaatgattctacaattttattctcttaattaacttgcttaccaagtaaaatataaaacat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486899 |
tctcaaagtaattaacttttatacatgcctttttgattagtaatgattctacaattttattctcttaattaacttgcttaccaagtaaaatataaaacat |
2486998 |
T |
|
| Q |
152 |
ccaatcaaattttgctactctcttaactattctgtgtattttaaggttatttctatgtactttgcactgtttttcttaaatcatgtttaggaatctttgc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486999 |
ccaatcaaattttgctactctcttaactattctgtgtattttaaggttatttctatgtactttgcactgtttttcttaaatcatgtttaggaatctttgc |
2487098 |
T |
|
| Q |
252 |
ttgtacttgctttgttattaagcaagcataattgttttgtcattctttaattggattcttttgaaattggtataatatgacacaacacatggaatttgct |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2487099 |
ttgtacttgctttgttattaagcaagcataattgttttgtcattctttaattggattcttttgaaattggtataatatgacacaacacatggaatttgct |
2487198 |
T |
|
| Q |
352 |
tcggttataggattttcaatttcatgagatatatg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2487199 |
tcggttataggattttcaatttcatgagatatatg |
2487233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 2486836 - 2486878
Alignment:
| Q |
15 |
aagaacattgactaattaaccaattcaattccactattctcaa |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2486836 |
aagaacattgactaattaaccaattcaattccactattttcaa |
2486878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University