View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11511_low_9 (Length: 389)
Name: NF11511_low_9
Description: NF11511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11511_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 44333157 - 44332783
Alignment:
| Q |
1 |
tgcgtgaagatggtcttcttaagagtgatgatgctgttggtggttcttctcaacaagatatgagaaatattactgattttagattaccttcttcacaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44333157 |
tgcgtgaagatggtcttcttaagagtgatgattctgttggtggttcttctcaacaagatatgagaaatattgctgattttagattaccttcttcacaggg |
44333058 |
T |
|
| Q |
101 |
aaactcatcatcaggtacaatattgctttcattttctttttcttacatttacctacacaattgcattatcatctttatcttaaataattgacataagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44333057 |
aaactcatcatcaggtacaatattgctttcattttctttttcttacatttacctacacaattgcattatcatctttatcttaaataattgacataagatt |
44332958 |
T |
|
| Q |
201 |
tccatcctcctttttggtaaacnnnnnnnnnnctaaatttaatgttgaccaaaattcattcaacttgtttttcaaatatggtaaatgcaacaatctatga |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44332957 |
tccatcctcctttttggtaaac--ttttttttctaaatttaatgttgaccaaaattcattcaacttgtttttcaaatatggtaaatgcaacaatctatga |
44332860 |
T |
|
| Q |
301 |
aaaattagtattaataataatccccttaaatttcacatgaccaaaacatgttattctaagtgcaacactgatgtcca |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44332859 |
aaaattagtattaataataatccccttaaatttcacatgaccaaaacatgttattctaagtgcaacactgatgtcca |
44332783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University