View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11512_high_5 (Length: 393)
Name: NF11512_high_5
Description: NF11512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11512_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 53574809 - 53575151
Alignment:
| Q |
22 |
gttcctctatccaatatctttatactaattaagctacacatgattccacgcttaaaactatgacctaattctccaattccacatttttcttttctaaatc |
121 |
Q |
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| T |
53574809 |
gttcctctatccaatatctttatactaattaagctacacatgattccacccttaaaactatgacctaattctccaattccacatttttcttttctaaatc |
53574908 |
T |
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| Q |
122 |
aactcaaccttaaaacgaaccgacgaaaagaaactattaatatgaacacaaccttgtaatatcaannnnnnnaagaaatgttgatttacttgcaaagtaa |
221 |
Q |
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| T |
53574909 |
aactcaaccttaaaacgaaccgacgaaaagaaactattaatatgaacacaaccttgtaatatcaatttgtttaagaaatgttgatttacttgcaaagtaa |
53575008 |
T |
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| Q |
222 |
caaaaatcaacagtacagtctataagaaatgttgattttatttgcaaagtgacaaaaataaactcccggtgaaggatctaaccaccattcaattgtttaa |
321 |
Q |
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| T |
53575009 |
caaaaatcaacagtacagtctataagaaatgttgattttatttgcaaagtgacaaaaataaactcccggtgaaggatctaaccaccattcaattgtttaa |
53575108 |
T |
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| Q |
322 |
ttgaaataaaatcgagacaatctctccgacaacactcatacgt |
364 |
Q |
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| T |
53575109 |
ttgaaataaaatcgggacaatctctccgacaacactcatacgt |
53575151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 26160746 - 26160710
Alignment:
| Q |
34 |
aatatctttatactaattaagctacacatgattccac |
70 |
Q |
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| T |
26160746 |
aatatctttctactaattaagctacacatgattccac |
26160710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 26160587 - 26160531
Alignment:
| Q |
291 |
tgaaggatctaaccaccattcaattgtttaattgaaataaaatcgagacaatctctc |
347 |
Q |
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|||| ||| |||||||| ||||||| ||||||||||||||||| | | ||||||||| |
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| T |
26160587 |
tgaaagatttaaccaccgttcaattttttaattgaaataaaattgggccaatctctc |
26160531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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