View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11512_high_7 (Length: 228)
Name: NF11512_high_7
Description: NF11512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11512_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53575246 - 53575469
Alignment:
| Q |
1 |
ttttgggtttcatgaatgtgatgatgtaatcataaatgtaagagaaagatgaaggagaggaagataaaactaaaggagacatttttatgaatttgtgttt |
100 |
Q |
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| T |
53575246 |
ttttgggtttcatgaatttgatgatgaaatcataaatgtaagagaaagatgaaggagaggaagataaaactaaaggagacatttttatgaatttgtgttt |
53575345 |
T |
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| Q |
101 |
attgatggtgatgttgaatgagaaagattaaaatcatggcgatagagataatgaataaggttgtgaacttagctcagttggttgctacaatgcatgcata |
200 |
Q |
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| T |
53575346 |
attgatggtgatgttgaatgagaaagattaaaatcatggtggtagagataatgaataaggttgtgaacttaattcagttggttggtataatgcatgcata |
53575445 |
T |
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| Q |
201 |
aaatatgcaaggttcggtggttca |
224 |
Q |
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| T |
53575446 |
aaatatgcaaggttcgggggttca |
53575469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 53574505 - 53574459
Alignment:
| Q |
81 |
atttttatgaatttgtgtttattgatggtgatgttgaatgagaaaga |
127 |
Q |
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| T |
53574505 |
atttttctgcatttgtgtttattgatgatgatgttgaatgagaaaga |
53574459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 22837126 - 22837005
Alignment:
| Q |
19 |
tgatgatgtaatcataaatgt-aagagaaagatgaaggagaggaagataaaactaaaggagacatttttat-gaatttgtgtttattgatggtgatgttg |
116 |
Q |
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| T |
22837126 |
tgatgatgaagtcataaatgtgaagaaaaagatgaaggagatga-gttgaaactggaggagaaatttttaaagagtttgtgtttattgatgatgatgttt |
22837028 |
T |
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| Q |
117 |
aatgagaaagattaaaatcatgg |
139 |
Q |
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| T |
22837027 |
actgagaaagatgaagatcatgg |
22837005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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