View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11512_low_5 (Length: 469)

Name: NF11512_low_5
Description: NF11512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11512_low_5
NF11512_low_5
[»] chr5 (2 HSPs)
chr5 (18-266)||(495035-495284)
chr5 (409-457)||(494672-494721)
[»] chr7 (8 HSPs)
chr7 (291-397)||(10979533-10979640)
chr7 (30-151)||(25500970-25501091)
chr7 (27-149)||(25492588-25492710)
chr7 (43-151)||(25642403-25642511)
chr7 (43-151)||(25473842-25473950)
chr7 (62-151)||(25449968-25450057)
chr7 (43-102)||(25429197-25429256)
chr7 (33-150)||(25431183-25431300)
[»] chr2 (1 HSPs)
chr2 (48-150)||(35152984-35153086)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 495284 - 495035
Alignment:
Q  18 aatgtaggtgaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagg 117  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  495284 aatgtagggcaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgatgaagatgaagttgagaatgaagaagccaagg 495185  T
Q  118 gaaaagaaatcaatctctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttcaagggggaaattatatttttaaagc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||||||||||||||||||||||||    
T  495184 gaaaagaaatcaatctctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttctagggggaaattatatttttaaagc 495085  T
Q  218 attgatataatagt-aattactaataactaatatatcatagtgcatcaaa 266  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  495084 attgatacaatagtaaattactaataactaatttatcatagtgcatcaaa 495035  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 494721 - 494672
Alignment:
Q  409 agtgatggaatgtaaaaa-tacatgtgaaatttcagtctccgctaggcct 457  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  494721 agtgatggaatttaaaaaatacatgtgaaatttcagtctccgctaggcct 494672  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 10979640 - 10979533
Alignment:
Q  291 tagtttggtttctt-aggaatttattgtccacttcctgataagattcatcggctatctttgcttgaagttttggatttgagctcaaatttcttatttgat 389  Q
    |||||||||||||| |||||| |   |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  10979640 tagtttggtttctttaggaatatggggtccactttctgataaaattcataggctatctttgcttgaagttttggatttgagttcaaatttcttatttggt 10979541  T
Q  390 tctattcc 397  Q
    ||||||||    
T  10979540 tctattcc 10979533  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 25500970 - 25501091
Alignment:
Q  30 agaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatca 129  Q
    |||||||| ||  |||||||||||||| | ||||||||||||||||  ||||||| |||||||||||| ||||   || |||||||||| |||| ||  |    
T  25500970 agaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagtaacta 25501069  T
Q  130 atctctttaatctaggcctttt 151  Q
    ||||||||||||| ||||||||    
T  25501070 atctctttaatcttggcctttt 25501091  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 25492588 - 25492710
Alignment:
Q  27 gaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaa 126  Q
    ||||||||||| ||  |||||||||||||| | ||||||||||||||||  |||| || |||||||||||| ||||   || |||||||||| |||||||    
T  25492588 gaaagaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttgtgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaa 25492687  T
Q  127 tcaatctctttaatctaggcctt 149  Q
       ||||||||||||| ||||||    
T  25492688 ctgatctctttaatcttggcctt 25492710  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 25642403 - 25642511
Alignment:
Q  43 ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatct 142  Q
    |||||||||||||| | || |||||||||||||  ||||||| |||||||||||  ||||| || | ||||||||| |||||||   |||||||||||||    
T  25642403 ttgagcctaaaatccaactcccttacaattggtttgtttctgatgaagatgaagccgagaaggatggagccaaggggaaagaaactgatctctttaatct 25642502  T
Q  143 aggcctttt 151  Q
     ||||||||    
T  25642503 tggcctttt 25642511  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 25473950 - 25473842
Alignment:
Q  43 ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatga-agaagccaagggaaaagaaatcaatctctttaatc 141  Q
    ||||| |||||||| | |||||||||||||||| |||||||   ||||||  | | |||||||| |||| ||||||||||||||| | ||||||||||||    
T  25473950 ttgagactaaaatccaacttccttacaattggttagtttctaacgaagattcaatcgagaatgatagaa-ccaagggaaaagaaaccgatctctttaatc 25473852  T
Q  142 taggcctttt 151  Q
    | ||||||||    
T  25473851 ttggcctttt 25473842  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 25449968 - 25450057
Alignment:
Q  62 tccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcctttt 151  Q
    |||||||||||||| |||||||   ||||||||||  ||||| || ||||||||||| || ||||   ||||||||||||| ||||||||    
T  25449968 tccttacaattggttagtttctaaagaagatgaagccgagaaagatgaagccaaggggaaggaaactgatctctttaatcttggcctttt 25450057  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 25429197 - 25429256
Alignment:
Q  43 ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgaga 102  Q
    |||||||||||||| | | |||||||||||||| |||||||| ||||||| |||| ||||    
T  25429197 ttgagcctaaaatctaacatccttacaattggttagtttctgatgaagataaagtcgaga 25429256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 25431300 - 25431183
Alignment:
Q  33 agcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatc 132  Q
    ||||| ||| ||||||| |||||| | |||||||||||||||| ||||||||   |||||||||  ||||| || | ||||||| | || |||||   ||    
T  25431300 agcagtagatttgagccgaaaatccaacttccttacaattggttagtttctgacaaagatgaagccgagaaggatgcagccaagcggaaggaaattggtc 25431201  T
Q  133 tctttaatctaggccttt 150  Q
    ||| |||||| |||||||    
T  25431200 tctctaatcttggccttt 25431183  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 35152984 - 35153086
Alignment:
Q  48 cctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaatcaatctctttaatctaggcc 147  Q
    ||||||||| ||||||| |||||||||| |||| |||  || || ||||||||||||   |||||||||  |||||||||  |||| | |||||| ||||    
T  35152984 cctaaaatccagcttccctacaattggttagttactgaggaggaagaagttgagaattctgaagccaagtcaaaagaaattgatctttataatctgggcc 35153083  T
Q  148 ttt 150  Q
    |||    
T  35153084 ttt 35153086  T

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