View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11513_high_3 (Length: 347)
Name: NF11513_high_3
Description: NF11513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11513_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 37745116 - 37745446
Alignment:
| Q |
1 |
tataaaacataaattattaaaagttatcatatgattttgtgnnnnnnn-agaggaaacataaaatgannnnnnnngtggttgttgtatatttctctgaat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
37745116 |
tataaaacataaattattaaaagttatcatatgattttgtgttttttttagaggaaacattaaatgattttttt-gtggttgttgtatatttctctgaat |
37745214 |
T |
|
| Q |
100 |
gtgagtacaattgtcattaaagcaagaaaataaatttgatgaaatttcaaattttgtcatataaaagtattgtatttacataaagggcacattgaaatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37745215 |
gtgagtacaattgtcattaaagcaagaaaataaatttgatgaaatttcaaattttgtcatataaaagtattgtatttacataaagggcacattgaaatta |
37745314 |
T |
|
| Q |
200 |
aagaccttgacaagtgagagtagtataaaagagggtattgtgtaataccattcttctctcaaaatatacctaagtatttcaaacttcaaagtaagagtac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37745315 |
aagaccttgacaagtgagagtagtataaaagagggtattgtgtaataccattcttctctcaaaatatacctaagtatttcaaacttcaaagtaagagtac |
37745414 |
T |
|
| Q |
300 |
tttagaaaagaaaaatggtgagagttgcaaag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
37745415 |
tttagaaaagaaaaatggtgagagttgcaaag |
37745446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University