View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11513_high_4 (Length: 332)
Name: NF11513_high_4
Description: NF11513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11513_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 8154160 - 8153857
Alignment:
| Q |
13 |
gagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaacatctctcgtatatcaaatatttagttcattcac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8154160 |
gagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaacatctctcgtatatcaaatatttagttcattcat |
8154061 |
T |
|
| Q |
113 |
ggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8154060 |
ggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagc |
8153961 |
T |
|
| Q |
213 |
gatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8153960 |
gatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaat |
8153861 |
T |
|
| Q |
313 |
cttc |
316 |
Q |
| |
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|||| |
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| T |
8153860 |
cttc |
8153857 |
T |
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