View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11513_high_7 (Length: 201)
Name: NF11513_high_7
Description: NF11513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11513_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 36125912 - 36125744
Alignment:
| Q |
19 |
gaactgttgagcatgcttcaagtcagttacttccacaagtccatactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttaga |
118 |
Q |
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| T |
36125912 |
gaactgttgagcatggttcaagtcagttacttccacaagtccatactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttaga |
36125813 |
T |
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| Q |
119 |
tgtccatgtggtaacttttcgtccggaaattctctgtaaaggtaagctaaacctctagctactcctttg |
187 |
Q |
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| T |
36125812 |
tgtccatgtggtaacttttcgtccggaaattctctgtaaaggtaagctaaacctctagctactcctttg |
36125744 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 1255807 - 1255674
Alignment:
| Q |
53 |
acaagtccatactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttagatgtccatgtggtaacttttcgtccggaaattctc |
152 |
Q |
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|||||||||||||||||||||| |||||||| ||| || || || ||||| || ||||||||||| |||||||||| |||| | || |||||| |
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| T |
1255807 |
acaagtccatactcagttaaaagtggctcaaaggaaatgtttagcattacattggaggattttagatgaccatgtggtaggttttgtttagggaattctt |
1255708 |
T |
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| Q |
153 |
tgtaaaggtaagctaaacctctagctactccttt |
186 |
Q |
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| T |
1255707 |
tgtagaggtgtgctaagcctcttgctactccttt |
1255674 |
T |
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