View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11513_low_1 (Length: 446)
Name: NF11513_low_1
Description: NF11513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11513_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 50532669 - 50532262
Alignment:
| Q |
15 |
atgaaaatcacgagtatgggaacatggtgcatgagtgggagctcaaccactcacggttgattctagctgcttgcagtagtgcttaattcaacaacaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50532669 |
atgaaaatcacgagtatgggaacatggtgcatgagtgggagctcaaccactcacggttgattctagctgcttgcagtagtgcttaattcaacaacaaaac |
50532570 |
T |
|
| Q |
115 |
cttatgcaaatcagaattcatataacattaaaccagaaaactagaattcattaaactggtaaatcagaatcatacaacattaaccagtaggtactaattt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50532569 |
cttatgcaaatcagaattcatataacattaaaccagaaaactataattcattaaactggtaaatcagaatcatacaacattaaccagtaggtactaattt |
50532470 |
T |
|
| Q |
215 |
gacggagatggatgggaataagtcatggatttttaataagttttaataatttagggaacaatttgaacaaagagtaatagttcagggacgaaattgaggg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50532469 |
gacggagatggatgggaataagtcatggatttttaataagttttaataatttagggaacaatttgaacaaagagtaatagttcagggacgaaattgaggg |
50532370 |
T |
|
| Q |
315 |
tttattnnnnnnnnnntaaagcaaattttcacttagttgaacattcctcaagaatcatagggttgatctgttcaacttcacccaacctcagtttcataca |
414 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50532369 |
tttattaaaaaataaataaagcaaattttcacttagctgaacattcctcaagaatcatagggttgatctgttcaacttcacccaacctcagtttcataca |
50532270 |
T |
|
| Q |
415 |
tataagca |
422 |
Q |
| |
|
|||||||| |
|
|
| T |
50532269 |
tataagca |
50532262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University