View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11513_low_2 (Length: 359)

Name: NF11513_low_2
Description: NF11513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11513_low_2
NF11513_low_2
[»] chr4 (1 HSPs)
chr4 (26-343)||(47600819-47601141)
[»] chr5 (8 HSPs)
chr5 (35-335)||(13385615-13385915)
chr5 (35-335)||(13389436-13389741)
chr5 (53-201)||(13453431-13453579)
chr5 (64-210)||(13393964-13394110)
chr5 (74-186)||(13411307-13411419)
chr5 (90-187)||(13412715-13412812)
chr5 (90-202)||(13425953-13426065)
chr5 (276-333)||(13393845-13393902)
[»] chr8 (1 HSPs)
chr8 (68-183)||(28431168-28431283)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 343
Target Start/End: Original strand, 47600819 - 47601141
Alignment:
Q  26 tatatgctagctaacttacccgaaagcaaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagta 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47600819 tatatgctagctaacttacccgaaagcaaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagta 47600918  T
Q  126 atccaattagaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtatccactgcagcctataa---aatcattaacataattag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    || ||||||||| || |    
T  47600919 atccaattagaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtattcactgcagcctataatattattattaacatagtttg 47601018  T
Q  223 ttaat---taattgatttaccatcatcattttaagaatattagaatattgaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaa 319  Q
    |||||   ||||||| |||||||   || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47601019 ttaattactaattga-ttaccatttccaatttaagaatattagaatgtttaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaa 47601117  T
Q  320 tgagtcagctcctaagcattctct 343  Q
    ||||||||||||||||||||||||    
T  47601118 tgagtcagctcctaagcattctct 47601141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 35 - 335
Target Start/End: Complemental strand, 13385915 - 13385615
Alignment:
Q  35 gctaacttacccgaaagcaaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaatta 134  Q
    |||| ||||||| |||  |||| |||||| |||| ||||||||||||  | ||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  13385915 gctagcttacccaaaattaaaggaaagacggggatctccagaggcttgtcaggtacaccaaccattacaagttttccatgagacttcagtaatccaagta 13385816  T
Q  135 gaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtatccactgcagcctataaaatcattaacataattagttaattaattga 234  Q
    | ||  ||| |||||| |  |||||||| || ||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||| || || ||||||    
T  13385815 gtggcaagacaggatgatttgctgaaacggtatcaatgataccatccaaagtacccagtgcagactataaaaacattaacataattatttcatgaattga 13385716  T
Q  235 tttaccatcatcattttaagaatattagaatattgaacta-ttgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctccta 333  Q
     ||| |||  ||| ||| || ||| ||||||||||||||| || | ||| ||| ||||| |||||||||||||||||||||| |||||| ||||||||||    
T  13385715 -ttagcattgtcaatttgagtataatagaatattgaactatttttttttgtacctgcattttatcttggtcacgacttatcagaaatgaatcagctccta 13385617  T
Q  334 ag 335  Q
    ||    
T  13385616 ag 13385615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 335
Target Start/End: Complemental strand, 13389741 - 13389436
Alignment:
Q  35 gctaacttacccgaaagcaaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaatta 134  Q
    |||| ||||||| |||  |||| |||||| |||| ||||| ||||||  | ||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  13389741 gctagcttacccaaaattaaaggaaagacggggatctccaaaggcttgtcaggtacaccaaccattacaagttttccatgagacttcaataatccaatta 13389642  T
Q  135 gaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtatccactgcagcctataaaatcattaacataattagttaattaattga 234  Q
    | ||| ||| |||||| |  ||||||||||| || |||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||| || ||||||    
T  13389641 ggggtaagataggatgatttgctgaaactgtatcgatgataccatccaaagtacccaatgcagactataaaaacattaacataattagttcatgaattga 13389542  T
Q  235 tt-----taccatcatcattttaagaatattagaatattgaactattgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagct 329  Q
    ||     || |||  ||| |||  | ||| ||||| ||||||| ||| | ||| ||| ||||| || ||||||||||||||||||| |||||| || |||    
T  13389541 ttagcaatagcattgtcaatttctgtataatagaaaattgaacaattttttttgtacctgcattttctcttggtcacgacttatcagaaatgaatcggct 13389442  T
Q  330 cctaag 335  Q
    ||||||    
T  13389441 cctaag 13389436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 13453431 - 13453579
Alignment:
Q  53 aaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgtt 152  Q
    |||| ||| ||||| ||||| ||||||||  | || ||||||||||||||||| |||||||||||||| ||||| ||||| |||||| | || ||||| |    
T  13453431 aaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagtaaaccaatcagaggtaatagcggatgat 13453530  T
Q  153 cagctgaaactgtgtcaatgataccatccaaagtatccactgcagccta 201  Q
    | |||||||||||||| || ||||||||||||||| ||  |||||||||    
T  13453531 ccgctgaaactgtgtcgataataccatccaaagtagccgttgcagccta 13453579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 13394110 - 13393964
Alignment:
Q  64 agggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgttcagctgaaact 163  Q
    |||||||||| |||||||  | || ||||| ||||||||||||||||| ||| | || | ||| |||| ||||||| |||||||||| || |||||||||    
T  13394110 agggagctccggaggcttgtcaggtgcaccgaccattacaagttttccgtgatattttaataaaccaactagaggtaagagaggatgatccgctgaaact 13394011  T
Q  164 gtgtcaatgataccatccaaagtatccactgcagcctataaaatcat 210  Q
    || || ||||| |||||||||||| |||  |||||||||||||||||    
T  13394010 gtatcgatgatgccatccaaagtacccatcgcagcctataaaatcat 13393964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 13411419 - 13411307
Alignment:
Q  74 agaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgttcagctgaaactgtgtcaatga 173  Q
    ||||||||| |||| |||||||||| |||||| ||||||||||| || |||||  ||||||| ||| |||| | ||| ||||| |||| ||||||||| |    
T  13411419 agaggcttctctggggcaccaaccaatacaagctttccatgagattttagtaaatcaattaggggtaagagggaatgatcagcagaaattgtgtcaataa 13411320  T
Q  174 taccatccaaagt 186  Q
    |||||||||||||    
T  13411319 taccatccaaagt 13411307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 13412715 - 13412812
Alignment:
Q  90 caccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagta 187  Q
    |||||| ||||| ||| ||||||||||||||||  |  ||||| |  ||| ||||||||||  ||||||||||||||||||| |||||||||||||||    
T  13412715 caccaagcattataagctttccatgagacttcaagagaccaatcattggtaagagaggatgaacagctgaaactgtgtcaataataccatccaaagta 13412812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 13425953 - 13426065
Alignment:
Q  90 caccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtatc 189  Q
    |||||||||||||||||||||||| ||| |||| ||| ||||| |  ||| ||| ||||||    || ||||| ||||| || ||||||| ||||||| |    
T  13425953 caccaaccattacaagttttccattagatttcaataaaccaatcaatggtaagataggatgacttgccgaaacagtgtcgataataccattcaaagtacc 13426052  T
Q  190 cactgcagcctat 202  Q
    || ||||||||||    
T  13426053 cattgcagcctat 13426065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 13393902 - 13393845
Alignment:
Q  276 tgtatttatacttgcatcttatcttggtcacgacttatcaaaaatgagtcagctccta 333  Q
    ||||||| ||| ||||| |||||||||||| ||||||| | |||||| ||||||||||    
T  13393902 tgtatttgtacctgcattttatcttggtcatgacttataagaaatgaatcagctccta 13393845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 28431283 - 28431168
Alignment:
Q  68 agctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgttcagctgaaactgtgt 167  Q
    ||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||  |  ||||| | |||| | | ||||||  | || ||||||||||    
T  28431283 agctccagaggcttctcaggtgcaccaaccataacaagttttccatgagatttcaaaagaccaatcaaaggtaacaaaggatggacggcagaaactgtgt 28431184  T
Q  168 caatgataccatccaa 183  Q
    ||||||||||||||||    
T  28431183 caatgataccatccaa 28431168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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