View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_1 (Length: 705)
Name: NF11514_high_1
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 40002033 - 40001347
Alignment:
| Q |
1 |
tatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttggaacagcattcggattggtttcatt |
100 |
Q |
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| T |
40002033 |
tatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttagaacagcattcggattggtttcatt |
40001934 |
T |
|
| Q |
101 |
ggcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtccttttagcacacaaaacatgtcaccatataacac |
200 |
Q |
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| T |
40001933 |
ggcatgcgcattgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtttttttagcacacaaaacatgtcaccatataacac |
40001834 |
T |
|
| Q |
201 |
attcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacacaacaagtgcctataattatccattttaaaaatcttcaaaaacc |
300 |
Q |
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| T |
40001833 |
attcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacccaacaagtgcctataattatccattt-aaaaatcttcaaaaacc |
40001735 |
T |
|
| Q |
301 |
aacattctatctctctctgtgcctattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtcttctgcctat |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40001734 |
aacattctatctctctctgtgcttattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtcttctgcctat |
40001635 |
T |
|
| Q |
401 |
gattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttaccatgaaatcgat |
500 |
Q |
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| T |
40001634 |
gattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttaccatgaaatcgat |
40001535 |
T |
|
| Q |
501 |
caagggtactacacctaccatggagaacaagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattctgttacagaat |
600 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40001534 |
caagggtactacacctaccatggagaaccagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattctgttacagaat |
40001435 |
T |
|
| Q |
601 |
tctctaatggattctcttcttcgcccaagaaaaaatcgcattctactgttggctcaaactcaaaggaactcgtgagttataaagtatc |
688 |
Q |
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| T |
40001434 |
tctctaatgtattctcttcttcgcccaagaaaaaatcgcattctactgttggctcaaactcaaaggaactcgtgagttataaagtatc |
40001347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 500 - 637
Target Start/End: Complemental strand, 43103438 - 43103301
Alignment:
| Q |
500 |
tcaagggtactacacctaccatggagaacaagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattctgttacagaa |
599 |
Q |
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||||||| |||||| |||||||||||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |
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| T |
43103438 |
tcaagggcactacaactaccatggagaacaatcttctaattcaagggttgatgattatgcagacaaaattgattatcgaagatataattctgttatggaa |
43103339 |
T |
|
| Q |
600 |
ttctctaatggattctcttcttcgcccaagaaaaaatc |
637 |
Q |
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| T |
43103338 |
ttctctaatgggttctcttattcacctaagcaaaaatc |
43103301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 43105016 - 43104966
Alignment:
| Q |
9 |
ttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttg |
59 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaacttg |
43104966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 43104918 - 43104824
Alignment:
| Q |
102 |
gcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtcctt-ttagcacacaaaacatgtcaccatat |
195 |
Q |
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|||||| || |||||| ||||| ||||| ||||| ||||||||||||||||| || | |||||| ||| || ||||||||||||||||| ||||| |
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| T |
43104918 |
gcatgcaccatgccctactagctcagtcgaaacttatattaactaaattaatgtgttacattgttcttcttggcacacaaaacatgtcatcatat |
43104824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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