View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_13 (Length: 439)
Name: NF11514_high_13
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 11476014 - 11476445
Alignment:
| Q |
1 |
gaagcattcatgggttttaaggaacatagcctttgttgatgaaaacaatgttgtcaaatttaaaaagcatttgaattttatcttactataagcatcgtgt |
100 |
Q |
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||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11476014 |
gaagcattcttgcgttgtaaggaacatagcctttgtggatgaaaacaatgttgtcaaatttaaaaagcatttgaattttatcttactataagcatcgtgt |
11476113 |
T |
|
| Q |
101 |
caagcttctgtagacctggaaggtttacataaatatctgcccttggtctacttgtcatcatctgaaagatatcatcagatattatatacgacacattatg |
200 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11476114 |
caagcttctgtagagctggaaggtttatataaatatctgcccttggtctacttgtcatcatctgaaagatatcatcagatattatatacgacacattatg |
11476213 |
T |
|
| Q |
201 |
agatattagtataaagtattgttaaatagcggctatatcagtgtaacttagcaccagtatttaaaaagatcgctatttaaaatacacactaagcctaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11476214 |
agatattagtataaagtattgttaaatagcggctatatcagtgtaacttagcaccggtatttaaaaagatcgctatttaaaatacacactaagcctaatt |
11476313 |
T |
|
| Q |
301 |
aaggtgtagcaatagtttacctccacaattgtaccatcatccaaatattgtgcagttggtgcaaactctactatgtaatcacacacagacataagacaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11476314 |
aaggtgtagcaatagtttacctccacaattgtaccatcatccaagtattgtgcagttggtgcaaattctactatgtaatcacacacagacataagacaat |
11476413 |
T |
|
| Q |
401 |
tcatttctcttttccacatagctttcttctca |
432 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11476414 |
tcatttctcttttccacatagctttcttctca |
11476445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 432
Target Start/End: Complemental strand, 29298765 - 29298652
Alignment:
| Q |
319 |
acctccacaattgtaccatcatccaaatattgtgcagttggtgcaaactctactatgtaatcacacacagacataagacaattcatttctcttttccaca |
418 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
29298765 |
acctccacaattgtgccatcttctaaatattgtgcagttggggcaaattcttgtatgtaatcacacacagatagaagaactttcatttctcttttccaca |
29298666 |
T |
|
| Q |
419 |
tagctttcttctca |
432 |
Q |
| |
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| |||||||||| |
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| T |
29298665 |
tgattttcttctca |
29298652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 29299000 - 29298912
Alignment:
| Q |
81 |
tcttactataagcatcgtgtcaagcttctgtagacctggaaggtttacataaatatctgcccttggtctacttgtcatcatctgaaaga |
169 |
Q |
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||||||||||||||| |||||||||||||| || |||| || || | ||||||||||| |||||| || ||| ||||||||||||||| |
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| T |
29299000 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcctgcttttcatcatctgaaaga |
29298912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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