View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11514_high_15 (Length: 430)
Name: NF11514_high_15
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 39029070 - 39029473
Alignment:
| Q |
18 |
tatcatcttgatcaattgcttggtaatcaacactactctcaaaaggcttttccaaccaaacaactttactaggattgagaagatctttcttgaagtttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39029070 |
tatcatcttgatcaattgcttggtaatcaacactactctcaaaaggcttttccaaccaaacaactttactaggattgagaagatctttcttgaagtttga |
39029169 |
T |
|
| Q |
118 |
cacaatcttacaaagcttagaaaatggtcctgcatttgcatcaatgataatcaaaataaaacttggtgcagctccattgtttttcttcttgaacatcgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39029170 |
cacaatcttacaaagcttagaaaatggtcctgcatttgcatcaatgataatcagaacaaaacttggtgcagctccattgtttttct---tgaacatcgaa |
39029266 |
T |
|
| Q |
218 |
gatagatattcatttccatgatccatagctttgaaaggaactcttctactacaagaagagctataagatgtacacctagaactcatctccgaagactccg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39029267 |
gatagatattcatttccatgatccatagctttgaaaggaactcttctactacaagaagagctataagatgtacacctagaactcatctccgaagactccg |
39029366 |
T |
|
| Q |
318 |
gtgaactttgatcactgagatggtcacccttttcttttttgatcttcttgagagtatgaactagatgatttctactcttcacaaccttgactttaatccc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39029367 |
gtgaactttgatcactgagatggtcacccttttcttttttgatcttcttgagagtatgaactagatggtttctactcttcacaaccttgactttaatccc |
39029466 |
T |
|
| Q |
418 |
tatgctt |
424 |
Q |
| |
|
|| |||| |
|
|
| T |
39029467 |
taagctt |
39029473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University