View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_24 (Length: 331)
Name: NF11514_high_24
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 39238443 - 39238138
Alignment:
| Q |
16 |
aaatcatcaccaactagagattagttgttgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagat |
115 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39238443 |
aaatcatcaccaactagagattacttgatgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagat |
39238344 |
T |
|
| Q |
116 |
gtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcataggtgcatcaggtggagccgccactgatccgctccataaggtgttatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39238343 |
gtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcataggtgcatcaggtggagctgccactgatccactccataaggtgttatc |
39238244 |
T |
|
| Q |
216 |
gtaaacgattaatcccccaaccttaacaagatcaatcatcctcacgtgatagtttaagtagttattcttatcagcatccacaaaaacaaagtcaaacgtc |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39238243 |
gtaaccgattaatcccccaaccttaacaagatcaatcatcctcacgtgatagtttaagtagttattcttatcagcatccacaaaaacaaagtcaaacgtc |
39238144 |
T |
|
| Q |
316 |
cctttg |
321 |
Q |
| |
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|||||| |
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| T |
39238143 |
cctttg |
39238138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 311
Target Start/End: Complemental strand, 39050059 - 39049792
Alignment:
| Q |
44 |
tgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacg |
143 |
Q |
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|||| ||||||| |||||| |||||| ||| || ||||||||||| ||||| ||| |||||||||||| || || ||||||||||||||||||||||| |
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| T |
39050059 |
tgcgacgacataaggtaattccatcacctaccgaaagctgacaaatttcaatccttaaatcttgagctaaatacttgttgaactcaatcacataaccacg |
39049960 |
T |
|
| Q |
144 |
taaattcctaatgaaatccat-cataggtgcatcaggtggagccgccactgatccgctccataaggtgttatcgtaaacgattaatcccccaaccttaac |
242 |
Q |
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||||||| |||| ||| | || ||||||||||||| |||||| ||||||||||| ||||||||| ||||| || | || ||||| ||||| || || |
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| T |
39049959 |
taaattcataataaaa-ctatgcataggtgcatcatctggagctgccactgatccaacccataaggtattatcatatccaatcaatcctccaactttcac |
39049861 |
T |
|
| Q |
243 |
aagatcaatcatcctcacgtgatagtttaagtagttattcttatcagcatccacaaaaacaaagtcaaa |
311 |
Q |
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|||||||| || |||| |||||||||| |||||||||||| |||||||||||||||| ||||||||| |
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| T |
39049860 |
aagatcaagcaccctcttatgatagtttatgtagttattcttgtcagcatccacaaaaataaagtcaaa |
39049792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 311
Target Start/End: Complemental strand, 39056102 - 39055870
Alignment:
| Q |
79 |
agctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcataggtgcatcag |
178 |
Q |
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|||||||||||||| | |||||||||| ||||| || ||| || | ||||||||||| |||||||||| ||| |||||||| |||||| |||||| |
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| T |
39056102 |
agctgacaaatctcgacccttgaatctttagctaaatatttgttaagctcaatcacatgaccacgtaaacgtttaacgaaatccagcataggagcatcat |
39056003 |
T |
|
| Q |
179 |
gtggagccgccactgatccgctccataaggtgttatcgtaaacgattaatcccccaaccttaacaagatcaatcatcctcacgtgatagtttaagtagtt |
278 |
Q |
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|||| | || |||||||| |||||| || ||||| || | || ||||| ||||| |||||||||||||| |||||| | |||||||||||||| || |
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| T |
39056002 |
ctggaacagcaactgatccaaaccataaagtattatcatatccaatcaatcctccaactttaacaagatcaattatcctctcatgatagtttaagtaatt |
39055903 |
T |
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| Q |
279 |
attcttatcagcatccacaaaaacaaagtcaaa |
311 |
Q |
| |
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|| |||||||||||||||||||||||| ||||| |
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| T |
39055902 |
atccttatcagcatccacaaaaacaaaatcaaa |
39055870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 311
Target Start/End: Original strand, 39290986 - 39291262
Alignment:
| Q |
35 |
attagttgttgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcac |
134 |
Q |
| |
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||||| || ||||||| ||||| ||||| ||||| ||| || || ||||| |||| ||| ||| |||| || |||| |||||| || ||||||||||| |
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| T |
39290986 |
attagatgatgcggcggcatagagtaattccatcgcctactgagagttgacagatctgaatccttaaatcctgggctaaatgtttgttaaactcaatcac |
39291085 |
T |
|
| Q |
135 |
ataaccacgtaaattcctaatgaaatccatcataggtgcatcaggtggagccgccactgatccgctccataaggtgttatcgtaaacgattaatccccca |
234 |
Q |
| |
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|| |||||| |||||||||| | || |||| |||||||| | |||| |||| || || || |||||||||||||| || || | | ||||| ||| |
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| T |
39291086 |
atgaccacgaaaattcctaacgtaacttgtcatcggtgcatctgatggaaccgcaacagaaccactccataaggtgttgtcatatgcaaccaatcctcca |
39291185 |
T |
|
| Q |
235 |
accttaacaagatcaatcatcctcacgtgatagtttaagtagttattcttatcagcatccacaaaaacaaagtcaaa |
311 |
Q |
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|| |||||||| |||| || |||| ||||||||| | |||||||| |||||||||||||||| |||| || ||||| |
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| T |
39291186 |
actttaacaagctcaaccaccctcttgtgatagttaatgtagttatccttatcagcatccacataaacgaaatcaaa |
39291262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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