View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_32 (Length: 272)
Name: NF11514_high_32
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 3332114 - 3331862
Alignment:
| Q |
12 |
atcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtc |
111 |
Q |
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| T |
3332114 |
atcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtc |
3332015 |
T |
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| Q |
112 |
atattatccaaagttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaat |
211 |
Q |
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| T |
3332014 |
atattatccaaagttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaat |
3331915 |
T |
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| Q |
212 |
ttattaaaaagcagataggattagagagtcctacctggcaacatcttcatctc |
264 |
Q |
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| T |
3331914 |
taatgaaaaagcagataggattagagagtcctacctggcaacatctttatctc |
3331862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 3338421 - 3338349
Alignment:
| Q |
34 |
aatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaac |
106 |
Q |
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|||||| ||||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
3338421 |
aatttcttatctctagaagaaacaatagtattcatacataaaaacaatactatcaaagccaatgtgtagaaac |
3338349 |
T |
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