View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11514_high_34 (Length: 259)
Name: NF11514_high_34
Description: NF11514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11514_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 3853028 - 3852799
Alignment:
| Q |
16 |
cttcttctgaaaatgaacaaaaccaacaaacagtagaacaaagagactcaaatgaaaagagtctaatgtataggttgagagaaaatcccnnnnnnngttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3853028 |
cttcttctgaaaatgaacaaaaccaacaaacagtagaacagagagactcaaatgaaaagagtctaatgtataggttgagagaaaatcccaaaaaaagttt |
3852929 |
T |
|
| Q |
116 |
caaactttcagatcccaagttttatttctcaactacagaaactattgttcatgacagagagagtgaaaccgagtcaaagaacccaactcaaaaaagaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852928 |
caaactttcagatcccaagttttatttctcaactacagaaactattgttcatgacagagagagtgaaaccgagtcaaagaacccaactcaaaaaagaaaa |
3852829 |
T |
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| Q |
216 |
ctcacctttggccaaaactcagtacaaaag |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3852828 |
ctcacctttggccaaaactcagtacaaaag |
3852799 |
T |
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